Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | A4215_RS04175 | Genome accession | NZ_CP015573 |
| Coordinates | 834160..834612 (-) | Length | 150 a.a. |
| NCBI ID | WP_012340854.1 | Uniprot ID | W0R5B1 |
| Organism | Pasteurella multocida strain USDA-ARS-USMARC-60714 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 816672..833624 | 834160..834612 | flank | 536 |
Gene organization within MGE regions
Location: 816672..834612
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A4215_RS04055 (A4215_04030) | - | 816672..817382 (+) | 711 | WP_006248874.1 | hypothetical protein | - |
| A4215_RS04060 (A4215_04035) | - | 817921..818688 (-) | 768 | WP_012340839.1 | aldo/keto reductase | - |
| A4215_RS04065 (A4215_04040) | - | 818639..819007 (+) | 369 | WP_308700758.1 | DUF6803 family protein | - |
| A4215_RS04075 (A4215_04045) | - | 819189..819644 (+) | 456 | WP_005612095.1 | DUF411 domain-containing protein | - |
| A4215_RS04080 (A4215_04050) | - | 819658..821205 (+) | 1548 | WP_006248871.1 | multicopper oxidase family protein | - |
| A4215_RS04085 (A4215_04055) | - | 821295..821429 (-) | 135 | WP_015587091.1 | alcohol dehydrogenase catalytic domain-containing protein | - |
| A4215_RS04090 (A4215_04060) | - | 821539..821718 (+) | 180 | WP_006248870.1 | hypothetical protein | - |
| A4215_RS04095 (A4215_04065) | - | 821767..822285 (+) | 519 | WP_006248869.1 | hypothetical protein | - |
| A4215_RS04100 (A4215_04070) | tetR(H) | 822288..822911 (-) | 624 | WP_006248868.1 | tetracycline resistance transcriptional repressor TetR(H) | - |
| A4215_RS04105 (A4215_04075) | aadB | 823098..823631 (+) | 534 | WP_000381802.1 | aminoglycoside nucleotidyltransferase ANT(2'')-Ia | - |
| A4215_RS04110 (A4215_04080) | - | 823689..824557 (+) | 869 | Protein_777 | AadA family aminoglycoside 3''-O-nucleotidyltransferase | - |
| A4215_RS04115 (A4215_04085) | - | 824557..825384 (+) | 828 | WP_001007673.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-2 | - |
| A4215_RS04120 (A4215_04090) | - | 825475..826179 (+) | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| A4215_RS04125 (A4215_04095) | msr(E) | 826542..828017 (+) | 1476 | WP_000052512.1 | ABC-F type ribosomal protection protein Msr(E) | - |
| A4215_RS04130 (A4215_04100) | - | 828073..828957 (+) | 885 | WP_014325835.1 | Mph(E) family macrolide 2'-phosphotransferase | - |
| A4215_RS04135 (A4215_04105) | - | 829041..829745 (+) | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| A4215_RS04145 | - | 829751..829996 (+) | 246 | WP_025329032.1 | hypothetical protein | - |
| A4215_RS04150 (A4215_04110) | tetR(H) | 829999..830622 (-) | 624 | WP_006248868.1 | tetracycline resistance transcriptional repressor TetR(H) | - |
| A4215_RS04155 (A4215_04115) | tet(H) | 830714..831916 (+) | 1203 | WP_014325836.1 | tetracycline efflux MFS transporter Tet(H) | - |
| A4215_RS04160 (A4215_04120) | - | 832012..833322 (-) | 1311 | WP_011200814.1 | ISL3 family transposase | - |
| A4215_RS04165 (A4215_04125) | - | 833322..833558 (-) | 237 | WP_230294061.1 | hypothetical protein | - |
| A4215_RS04170 (A4215_04130) | - | 833665..833853 (-) | 189 | WP_011200812.1 | hypothetical protein | - |
| A4215_RS04175 (A4215_04135) | ssb | 834160..834612 (-) | 453 | WP_012340854.1 | single-stranded DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 150 a.a. Molecular weight: 17204.13 Da Isoelectric Point: 5.2733
>NTDB_id=181048 A4215_RS04175 WP_012340854.1 834160..834612(-) (ssb) [Pasteurella multocida strain USDA-ARS-USMARC-60714]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRYAEICGQYLRKGSKIYIEG
KLRTRKWQDQNGQERYTTEIQGELLQMLDSRNATNSVDGQQSNYQAMSQSPKATHPQDLPMDNFDDDIPF
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRYAEICGQYLRKGSKIYIEG
KLRTRKWQDQNGQERYTTEIQGELLQMLDSRNATNSVDGQQSNYQAMSQSPKATHPQDLPMDNFDDDIPF
Nucleotide
Download Length: 453 bp
>NTDB_id=181048 A4215_RS04175 WP_012340854.1 834160..834612(-) (ssb) [Pasteurella multocida strain USDA-ARS-USMARC-60714]
ATGGCAGGAATCAATAAAGTGATTATTGTCGGTAATCTTGGCAACGATCCTGAAATGCGGACTATGCCTAATGGTGAAGC
AGTTGCTAATATTAGTGTGGCAACTTCTGAAAGTTGGACGGATAAAAATACCGGAGAACGTCGAGAAGTCACTGAATGGC
ATCGTATCGTTTTTTATCGCCGTTATGCTGAAATTTGTGGTCAGTACCTACGTAAAGGCTCTAAAATTTATATCGAAGGA
AAATTACGGACACGTAAGTGGCAAGACCAAAACGGGCAAGAGCGTTATACAACCGAAATCCAAGGTGAACTATTACAAAT
GTTAGATAGCCGTAATGCTACAAATAGCGTAGATGGACAACAATCTAACTATCAAGCTATGAGCCAATCTCCAAAAGCAA
CACATCCACAAGATTTACCAATGGATAACTTTGATGATGATATTCCGTTCTGA
ATGGCAGGAATCAATAAAGTGATTATTGTCGGTAATCTTGGCAACGATCCTGAAATGCGGACTATGCCTAATGGTGAAGC
AGTTGCTAATATTAGTGTGGCAACTTCTGAAAGTTGGACGGATAAAAATACCGGAGAACGTCGAGAAGTCACTGAATGGC
ATCGTATCGTTTTTTATCGCCGTTATGCTGAAATTTGTGGTCAGTACCTACGTAAAGGCTCTAAAATTTATATCGAAGGA
AAATTACGGACACGTAAGTGGCAAGACCAAAACGGGCAAGAGCGTTATACAACCGAAATCCAAGGTGAACTATTACAAAT
GTTAGATAGCCGTAATGCTACAAATAGCGTAGATGGACAACAATCTAACTATCAAGCTATGAGCCAATCTCCAAAAGCAA
CACATCCACAAGATTTACCAATGGATAACTTTGATGATGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
63.333 |
100 |
0.76 |
| ssb | Vibrio cholerae strain A1552 |
51.724 |
100 |
0.6 |
| ssb | Neisseria gonorrhoeae MS11 |
45.665 |
100 |
0.527 |
| ssb | Neisseria meningitidis MC58 |
45.087 |
100 |
0.52 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
31.818 |
100 |
0.373 |