Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | A4213_RS03100 | Genome accession | NZ_CP015566 |
| Coordinates | 628119..628571 (+) | Length | 150 a.a. |
| NCBI ID | WP_012340854.1 | Uniprot ID | W0R5B1 |
| Organism | Pasteurella multocida strain USDA-ARS-USMARC-60712 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 629107..645509 | 628119..628571 | flank | 536 |
Gene organization within MGE regions
Location: 628119..645509
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A4213_RS03100 (A4213_03085) | ssb | 628119..628571 (+) | 453 | WP_012340854.1 | single-stranded DNA-binding protein | Machinery gene |
| A4213_RS03105 (A4213_03090) | - | 628878..629066 (+) | 189 | WP_011200812.1 | hypothetical protein | - |
| A4213_RS11075 | - | 629227..629409 (+) | 183 | WP_233791173.1 | hypothetical protein | - |
| A4213_RS03115 (A4213_03100) | - | 629409..630719 (+) | 1311 | WP_011200814.1 | ISL3 family transposase | - |
| A4213_RS03120 (A4213_03105) | tet(H) | 630815..632017 (-) | 1203 | Protein_597 | tetracycline efflux MFS transporter Tet(H) | - |
| A4213_RS11015 | - | 632159..632446 (+) | 288 | WP_143432442.1 | plasmid fertility inhibition factor family protein | - |
| A4213_RS11205 | - | 632364..632567 (-) | 204 | WP_199764664.1 | N-6 DNA methylase | - |
| A4213_RS11025 | - | 632602..632817 (-) | 216 | WP_021265564.1 | hypothetical protein | - |
| A4213_RS03130 (A4213_03115) | - | 633437..634225 (-) | 789 | WP_031192893.1 | ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA31 | - |
| A4213_RS03135 (A4213_03120) | - | 634460..634774 (-) | 315 | WP_000349485.1 | ArsR/SmtB family transcription factor | - |
| A4213_RS03140 (A4213_03125) | - | 634886..635920 (+) | 1035 | WP_021265566.1 | permease | - |
| A4213_RS03145 (A4213_03130) | - | 635933..637210 (+) | 1278 | WP_011872831.1 | ISL3 family transposase | - |
| A4213_RS03155 (A4213_03135) | tet(H) | 637597..638799 (-) | 1203 | Protein_605 | tetracycline efflux MFS transporter Tet(H) | - |
| A4213_RS03160 (A4213_03140) | tetR(H) | 638891..639514 (+) | 624 | WP_006248868.1 | tetracycline resistance transcriptional repressor TetR(H) | - |
| A4213_RS03165 (A4213_03145) | - | 639517..640035 (-) | 519 | WP_006248869.1 | hypothetical protein | - |
| A4213_RS11080 (A4213_03150) | - | 640084..640263 (-) | 180 | WP_006248870.1 | hypothetical protein | - |
| A4213_RS03175 (A4213_03155) | - | 640373..640507 (+) | 135 | WP_015587091.1 | alcohol dehydrogenase catalytic domain-containing protein | - |
| A4213_RS03180 (A4213_03160) | - | 640597..642144 (-) | 1548 | WP_006248871.1 | multicopper oxidase family protein | - |
| A4213_RS03185 (A4213_03165) | - | 642157..642612 (-) | 456 | WP_005612095.1 | DUF411 domain-containing protein | - |
| A4213_RS03195 (A4213_03170) | - | 642794..643210 (-) | 417 | WP_316244961.1 | DUF6803 family protein | - |
| A4213_RS03200 (A4213_03175) | - | 643113..643880 (+) | 768 | WP_012340839.1 | aldo/keto reductase | - |
| A4213_RS03205 (A4213_03180) | - | 644419..645129 (-) | 711 | WP_006248874.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 150 a.a. Molecular weight: 17204.13 Da Isoelectric Point: 5.2733
>NTDB_id=180888 A4213_RS03100 WP_012340854.1 628119..628571(+) (ssb) [Pasteurella multocida strain USDA-ARS-USMARC-60712]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRYAEICGQYLRKGSKIYIEG
KLRTRKWQDQNGQERYTTEIQGELLQMLDSRNATNSVDGQQSNYQAMSQSPKATHPQDLPMDNFDDDIPF
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRYAEICGQYLRKGSKIYIEG
KLRTRKWQDQNGQERYTTEIQGELLQMLDSRNATNSVDGQQSNYQAMSQSPKATHPQDLPMDNFDDDIPF
Nucleotide
Download Length: 453 bp
>NTDB_id=180888 A4213_RS03100 WP_012340854.1 628119..628571(+) (ssb) [Pasteurella multocida strain USDA-ARS-USMARC-60712]
ATGGCAGGAATCAATAAAGTGATTATTGTCGGTAATCTTGGCAACGATCCTGAAATGCGGACTATGCCTAATGGTGAAGC
AGTTGCTAATATTAGTGTGGCAACTTCTGAAAGTTGGACGGATAAAAATACCGGAGAACGTCGAGAAGTCACTGAATGGC
ATCGTATCGTTTTTTATCGCCGTTATGCTGAAATTTGTGGTCAGTACCTACGTAAAGGCTCTAAAATTTATATCGAAGGA
AAATTACGGACACGTAAGTGGCAAGACCAAAACGGGCAAGAGCGTTATACAACCGAAATCCAAGGTGAACTATTACAAAT
GTTAGATAGCCGTAATGCTACAAATAGCGTAGATGGACAACAATCTAACTATCAAGCTATGAGCCAATCTCCAAAAGCAA
CACATCCACAAGATTTACCAATGGATAACTTTGATGATGATATTCCGTTCTGA
ATGGCAGGAATCAATAAAGTGATTATTGTCGGTAATCTTGGCAACGATCCTGAAATGCGGACTATGCCTAATGGTGAAGC
AGTTGCTAATATTAGTGTGGCAACTTCTGAAAGTTGGACGGATAAAAATACCGGAGAACGTCGAGAAGTCACTGAATGGC
ATCGTATCGTTTTTTATCGCCGTTATGCTGAAATTTGTGGTCAGTACCTACGTAAAGGCTCTAAAATTTATATCGAAGGA
AAATTACGGACACGTAAGTGGCAAGACCAAAACGGGCAAGAGCGTTATACAACCGAAATCCAAGGTGAACTATTACAAAT
GTTAGATAGCCGTAATGCTACAAATAGCGTAGATGGACAACAATCTAACTATCAAGCTATGAGCCAATCTCCAAAAGCAA
CACATCCACAAGATTTACCAATGGATAACTTTGATGATGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
63.333 |
100 |
0.76 |
| ssb | Vibrio cholerae strain A1552 |
51.724 |
100 |
0.6 |
| ssb | Neisseria gonorrhoeae MS11 |
45.665 |
100 |
0.527 |
| ssb | Neisseria meningitidis MC58 |
45.087 |
100 |
0.52 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
31.818 |
100 |
0.373 |