Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | A4208_RS03100 | Genome accession | NZ_CP015563 |
| Coordinates | 628431..628883 (+) | Length | 150 a.a. |
| NCBI ID | WP_012340854.1 | Uniprot ID | W0R5B1 |
| Organism | Pasteurella multocida strain USDA-ARS-USMARC-60380 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
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Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 629419..645821 | 628431..628883 | flank | 536 |
Gene organization within MGE regions
Location: 628431..645821
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A4208_RS03100 (A4208_03090) | ssb | 628431..628883 (+) | 453 | WP_012340854.1 | single-stranded DNA-binding protein | Machinery gene |
| A4208_RS03105 (A4208_03095) | - | 629190..629378 (+) | 189 | WP_011200812.1 | hypothetical protein | - |
| A4208_RS11085 | - | 629539..629721 (+) | 183 | WP_233791173.1 | hypothetical protein | - |
| A4208_RS03115 (A4208_03105) | - | 629721..631031 (+) | 1311 | WP_011200814.1 | ISL3 family transposase | - |
| A4208_RS03120 (A4208_03110) | tet(H) | 631127..632329 (-) | 1203 | Protein_597 | tetracycline efflux MFS transporter Tet(H) | - |
| A4208_RS11020 | - | 632471..632758 (+) | 288 | WP_143432442.1 | plasmid fertility inhibition factor family protein | - |
| A4208_RS11195 | - | 632676..632879 (-) | 204 | WP_199764664.1 | N-6 DNA methylase | - |
| A4208_RS11030 | - | 632914..633129 (-) | 216 | WP_021265564.1 | hypothetical protein | - |
| A4208_RS03130 (A4208_03120) | - | 633749..634537 (-) | 789 | WP_031192893.1 | ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA31 | - |
| A4208_RS03135 (A4208_03125) | - | 634772..635086 (-) | 315 | WP_000349485.1 | ArsR/SmtB family transcription factor | - |
| A4208_RS03140 (A4208_03130) | - | 635198..636232 (+) | 1035 | WP_021265566.1 | permease | - |
| A4208_RS03145 (A4208_03135) | - | 636245..637522 (+) | 1278 | WP_011872831.1 | ISL3 family transposase | - |
| A4208_RS03155 (A4208_03140) | tet(H) | 637909..639111 (-) | 1203 | WP_006248867.1 | tetracycline efflux MFS transporter Tet(H) | - |
| A4208_RS03160 (A4208_03145) | tetR(H) | 639203..639826 (+) | 624 | WP_006248868.1 | tetracycline resistance transcriptional repressor TetR(H) | - |
| A4208_RS03165 (A4208_03150) | - | 639829..640347 (-) | 519 | WP_006248869.1 | hypothetical protein | - |
| A4208_RS03175 (A4208_03160) | - | 640685..640819 (+) | 135 | WP_015587091.1 | alcohol dehydrogenase catalytic domain-containing protein | - |
| A4208_RS03180 (A4208_03165) | - | 640909..642456 (-) | 1548 | WP_006248871.1 | multicopper oxidase family protein | - |
| A4208_RS03185 (A4208_03170) | - | 642469..642924 (-) | 456 | WP_005612095.1 | DUF411 domain-containing protein | - |
| A4208_RS03195 (A4208_03175) | - | 643106..643522 (-) | 417 | WP_316244961.1 | DUF6803 family protein | - |
| A4208_RS03200 (A4208_03180) | - | 643425..644192 (+) | 768 | WP_012340839.1 | aldo/keto reductase | - |
| A4208_RS03205 (A4208_03185) | - | 644731..645441 (-) | 711 | WP_006248874.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 150 a.a. Molecular weight: 17204.13 Da Isoelectric Point: 5.2733
>NTDB_id=180823 A4208_RS03100 WP_012340854.1 628431..628883(+) (ssb) [Pasteurella multocida strain USDA-ARS-USMARC-60380]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRYAEICGQYLRKGSKIYIEG
KLRTRKWQDQNGQERYTTEIQGELLQMLDSRNATNSVDGQQSNYQAMSQSPKATHPQDLPMDNFDDDIPF
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRYAEICGQYLRKGSKIYIEG
KLRTRKWQDQNGQERYTTEIQGELLQMLDSRNATNSVDGQQSNYQAMSQSPKATHPQDLPMDNFDDDIPF
Nucleotide
Download Length: 453 bp
>NTDB_id=180823 A4208_RS03100 WP_012340854.1 628431..628883(+) (ssb) [Pasteurella multocida strain USDA-ARS-USMARC-60380]
ATGGCAGGAATCAATAAAGTGATTATTGTCGGTAATCTTGGCAACGATCCTGAAATGCGGACTATGCCTAATGGTGAAGC
AGTTGCTAATATTAGTGTGGCAACTTCTGAAAGTTGGACGGATAAAAATACCGGAGAACGTCGAGAAGTCACTGAATGGC
ATCGTATCGTTTTTTATCGCCGTTATGCTGAAATTTGTGGTCAGTACCTACGTAAAGGCTCTAAAATTTATATCGAAGGA
AAATTACGGACACGTAAGTGGCAAGACCAAAACGGGCAAGAGCGTTATACAACCGAAATCCAAGGTGAACTATTACAAAT
GTTAGATAGCCGTAATGCTACAAATAGCGTAGATGGACAACAATCTAACTATCAAGCTATGAGCCAATCTCCAAAAGCAA
CACATCCACAAGATTTACCAATGGATAACTTTGATGATGATATTCCGTTCTGA
ATGGCAGGAATCAATAAAGTGATTATTGTCGGTAATCTTGGCAACGATCCTGAAATGCGGACTATGCCTAATGGTGAAGC
AGTTGCTAATATTAGTGTGGCAACTTCTGAAAGTTGGACGGATAAAAATACCGGAGAACGTCGAGAAGTCACTGAATGGC
ATCGTATCGTTTTTTATCGCCGTTATGCTGAAATTTGTGGTCAGTACCTACGTAAAGGCTCTAAAATTTATATCGAAGGA
AAATTACGGACACGTAAGTGGCAAGACCAAAACGGGCAAGAGCGTTATACAACCGAAATCCAAGGTGAACTATTACAAAT
GTTAGATAGCCGTAATGCTACAAATAGCGTAGATGGACAACAATCTAACTATCAAGCTATGAGCCAATCTCCAAAAGCAA
CACATCCACAAGATTTACCAATGGATAACTTTGATGATGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
63.333 |
100 |
0.76 |
| ssb | Vibrio cholerae strain A1552 |
51.724 |
100 |
0.6 |
| ssb | Neisseria gonorrhoeae MS11 |
45.665 |
100 |
0.527 |
| ssb | Neisseria meningitidis MC58 |
45.087 |
100 |
0.52 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
31.818 |
100 |
0.373 |