Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A4216_RS07855 Genome accession   NZ_CP015560
Coordinates   1702266..1702718 (-) Length   150 a.a.
NCBI ID   WP_012340854.1    Uniprot ID   W0R5B1
Organism   Pasteurella multocida strain USDA-ARS-USMARC-60717     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1697266..1707718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4216_RS10995 - 1697999..1698235 (+) 237 WP_199764665.1 hypothetical protein -
  A4216_RS11175 - 1698270..1698473 (+) 204 WP_199764664.1 N-6 DNA methylase -
  A4216_RS11005 - 1698391..1698678 (-) 288 WP_143432442.1 plasmid fertility inhibition factor family protein -
  A4216_RS07835 (A4216_07755) tet(H) 1698820..1700022 (+) 1203 Protein_1524 tetracycline efflux MFS transporter Tet(H) -
  A4216_RS07840 (A4216_07760) - 1700118..1701428 (-) 1311 WP_011200814.1 ISL3 family transposase -
  A4216_RS07845 (A4216_07765) - 1701428..1701664 (-) 237 WP_230294061.1 hypothetical protein -
  A4216_RS07850 (A4216_07770) - 1701771..1701959 (-) 189 WP_011200812.1 hypothetical protein -
  A4216_RS07855 (A4216_07775) ssb 1702266..1702718 (-) 453 WP_012340854.1 single-stranded DNA-binding protein Machinery gene
  A4216_RS07860 (A4216_07780) - 1703074..1703559 (-) 486 WP_012340855.1 DUF3158 family protein -
  A4216_RS07865 (A4216_07785) - 1703568..1704326 (-) 759 WP_012340856.1 PFL_4669 family integrating conjugative element protein -
  A4216_RS07870 (A4216_07790) - 1704505..1705695 (-) 1191 WP_014325837.1 STY4528 family pathogenicity island replication protein -
  A4216_RS07875 (A4216_07795) - 1705854..1706411 (-) 558 WP_012340858.1 DUF2857 domain-containing protein -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 17204.13 Da        Isoelectric Point: 5.2733

>NTDB_id=180761 A4216_RS07855 WP_012340854.1 1702266..1702718(-) (ssb) [Pasteurella multocida strain USDA-ARS-USMARC-60717]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRYAEICGQYLRKGSKIYIEG
KLRTRKWQDQNGQERYTTEIQGELLQMLDSRNATNSVDGQQSNYQAMSQSPKATHPQDLPMDNFDDDIPF

Nucleotide


Download         Length: 453 bp        

>NTDB_id=180761 A4216_RS07855 WP_012340854.1 1702266..1702718(-) (ssb) [Pasteurella multocida strain USDA-ARS-USMARC-60717]
ATGGCAGGAATCAATAAAGTGATTATTGTCGGTAATCTTGGCAACGATCCTGAAATGCGGACTATGCCTAATGGTGAAGC
AGTTGCTAATATTAGTGTGGCAACTTCTGAAAGTTGGACGGATAAAAATACCGGAGAACGTCGAGAAGTCACTGAATGGC
ATCGTATCGTTTTTTATCGCCGTTATGCTGAAATTTGTGGTCAGTACCTACGTAAAGGCTCTAAAATTTATATCGAAGGA
AAATTACGGACACGTAAGTGGCAAGACCAAAACGGGCAAGAGCGTTATACAACCGAAATCCAAGGTGAACTATTACAAAT
GTTAGATAGCCGTAATGCTACAAATAGCGTAGATGGACAACAATCTAACTATCAAGCTATGAGCCAATCTCCAAAAGCAA
CACATCCACAAGATTTACCAATGGATAACTTTGATGATGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W0R5B1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

63.333

100

0.76
  ssb Vibrio cholerae strain A1552

51.724

100

0.6
  ssb Neisseria gonorrhoeae MS11

45.665

100

0.527
  ssb Neisseria meningitidis MC58

45.087

100

0.52
  ssbA Bacillus subtilis subsp. subtilis str. 168

31.818

100

0.373

Multiple sequence alignment