Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   A6M16_RS08765 Genome accession   NZ_CP015557
Coordinates   1771785..1772519 (-) Length   244 a.a.
NCBI ID   WP_024408312.1    Uniprot ID   -
Organism   Streptococcus suis strain DN13     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1766785..1777519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6M16_RS08735 (A6M16_08740) rnpM 1767013..1767309 (-) 297 WP_002942375.1 RNase P modulator RnpM -
  A6M16_RS08740 (A6M16_08745) nusA 1767326..1768468 (-) 1143 WP_014638606.1 transcription termination factor NusA -
  A6M16_RS08745 (A6M16_08750) rimP 1768541..1769011 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  A6M16_RS08750 (A6M16_08755) trmB 1769269..1769907 (-) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  A6M16_RS08755 (A6M16_08760) ccrZ 1769904..1770698 (-) 795 WP_002942360.1 cell cycle regulator CcrZ -
  A6M16_RS08760 (A6M16_08765) - 1770748..1771788 (-) 1041 WP_063725359.1 ABC transporter permease -
  A6M16_RS08765 (A6M16_08770) pptA 1771785..1772519 (-) 735 WP_024408312.1 ABC transporter ATP-binding protein Regulator
  A6M16_RS08770 (A6M16_08775) - 1772582..1772995 (+) 414 WP_063725360.1 HIT family protein -
  A6M16_RS08775 (A6M16_08780) - 1772997..1773299 (+) 303 WP_015647347.1 hypothetical protein -
  A6M16_RS08780 (A6M16_08785) - 1773409..1774602 (-) 1194 WP_024401267.1 LCP family protein -
  A6M16_RS08785 (A6M16_08790) - 1774599..1775126 (-) 528 WP_024376436.1 GNAT family N-acetyltransferase -
  A6M16_RS08790 (A6M16_08795) tsaE 1775119..1775559 (-) 441 WP_012775330.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  A6M16_RS08795 (A6M16_08800) - 1775660..1777324 (-) 1665 WP_063725361.1 DAK2 domain-containing protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26845.10 Da        Isoelectric Point: 4.3606

>NTDB_id=180694 A6M16_RS08765 WP_024408312.1 1771785..1772519(-) (pptA) [Streptococcus suis strain DN13]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGFIP
ETPSLYEELNLKEHLEVVAMAYDLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLIALLEEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQSAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=180694 A6M16_RS08765 WP_024408312.1 1771785..1772519(-) (pptA) [Streptococcus suis strain DN13]
ATGTTAGAAGTAAAAAATGTAACTGGAGGATATGTCAATATCCCAGTTTTGAAAGATGTATCTTTTACCGTTGAGGATGG
TCAATTAGTTGGTCTAATTGGTTTAAATGGTGCAGGGAAATCAACGACTATTAAGGAAATTATCGGTCTTTTGACCCCCT
ATCAAGGACAGATTGCAATTGACGGCCTAACTTTGCTACAAGGGGCTGAAAATTATCGGAAGAAGATTGGGTTTATCCCT
GAAACACCAAGTTTGTATGAAGAACTAAACCTCAAAGAGCACTTGGAAGTGGTAGCAATGGCCTATGATTTATCTTGGGA
GCAAGCTTGGGGACGTGTTGAGCACTTGTTAAAACTGTTTCGCTTGGATGAGAAATTGGACTGGTTTCCTGTCAATTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGAGTCTGTTGATTGTTGATGAGCCTTTT
CTGGGATTAGACCCTGTGGCTATCTCTGACTTGATCGCTCTTTTGGAGGAAGAAAAATCTAAGGGCACTTCAATCCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTTCGTGCAACTG
GAAATTTGGAGGAGCTACAAAGCGCATTTGGTATGGATGGTGCAAGTCTGAATGAAATTTATCTGGCCTTGACGCAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

74.895

97.951

0.734
  pptA Streptococcus thermophilus LMD-9

73.222

97.951

0.717

Multiple sequence alignment