Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   A6M16_RS08830 Genome accession   NZ_CP015557
Coordinates   1783629..1785419 (-) Length   596 a.a.
NCBI ID   WP_063725363.1    Uniprot ID   -
Organism   Streptococcus suis strain DN13     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1778629..1790419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6M16_RS08810 (A6M16_08815) - 1779437..1780339 (-) 903 WP_002942329.1 ABC transporter permease -
  A6M16_RS08815 (A6M16_08820) opp4B 1780353..1781309 (-) 957 WP_015647351.1 oligopeptide ABC transporter permease -
  A6M16_RS08820 (A6M16_08825) - 1781311..1782252 (-) 942 WP_002938145.1 ATP-binding cassette domain-containing protein -
  A6M16_RS08825 (A6M16_08830) - 1782255..1783253 (-) 999 WP_002942324.1 ABC transporter ATP-binding protein -
  A6M16_RS08830 (A6M16_08835) oppA 1783629..1785419 (-) 1791 WP_063725363.1 oligopeptide ABC transporter substrate-binding protein Regulator
  A6M16_RS08835 (A6M16_08840) pbp3 1785632..1786873 (+) 1242 WP_063725364.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  A6M16_RS08840 (A6M16_08845) sufB 1787048..1788463 (-) 1416 WP_063725365.1 Fe-S cluster assembly protein SufB -
  A6M16_RS08845 (A6M16_08850) sufU 1788644..1789084 (-) 441 WP_063725366.1 Fe-S cluster assembly sulfur transfer protein SufU -
  A6M16_RS08850 (A6M16_08855) - 1789071..1790294 (-) 1224 WP_063725367.1 cysteine desulfurase -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 65695.65 Da        Isoelectric Point: 4.5668

>NTDB_id=180695 A6M16_RS08830 WP_063725363.1 1783629..1785419(-) (oppA) [Streptococcus suis strain DN13]
MKKTTKLFALAGVTLLSASVLAACGSKQSGVAKQELSFPAEVKQDGTAVSDAQLKYAWVSPTTSSGLLIDELTENTTDST
FGGFVDISLFGFDGNRKLDDSGLAKAEFDVAGKKITVSLTGKDYKWSDGQPFTINDYIFTIKSMASKDYTGVRFDDKFLN
IEGMQEFVDGKASDISGIKKIDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWK
IKEIVNGESITYVPNEYFFKGTKPKTSSLKIDIVSPDTIVSEMKAGNYDIADMPVDQLDSYKKASNLNIVGSLDSAYEYI
SFNFGKYDEAAGKNVMDENAKMNDVKLRQAIAYAIDTKTAGESLYNGLYHPAKSLIISFFGDIHDSELEGYSYNPEKAKK
LLDEAGYKDVDGDGIREGKDGKEFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEGKSFYNSVQANDAAID
MYAGGWSTGYDPNPSGLWGPIAAFNMSRFVSDENTKLLEAISSTESFDDKKNVENYKAWQKYAYEQAFAIPTFESESIVA
LNKRVKNYDTNYGSASGKGIALENIELTADKGVVAE

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=180695 A6M16_RS08830 WP_063725363.1 1783629..1785419(-) (oppA) [Streptococcus suis strain DN13]
ATGAAAAAGACAACGAAACTTTTTGCACTTGCAGGTGTGACTCTCCTTTCAGCATCTGTTCTTGCAGCATGTGGTTCAAA
ACAATCAGGTGTAGCAAAACAGGAATTGTCATTCCCAGCTGAGGTAAAACAAGACGGAACAGCAGTGTCTGATGCTCAGT
TGAAATACGCATGGGTATCACCAACAACTTCATCAGGTCTCTTGATTGACGAGTTGACTGAAAATACAACTGACTCAACA
TTTGGTGGTTTTGTTGATATCTCACTGTTCGGTTTCGATGGAAATCGTAAGTTAGATGATTCAGGTCTTGCTAAAGCTGA
ATTTGATGTAGCAGGTAAGAAAATCACAGTTAGCTTGACAGGTAAGGACTACAAGTGGTCAGATGGTCAACCATTCACAA
TCAACGACTACATCTTTACTATCAAGTCAATGGCAAGCAAAGATTATACAGGTGTTCGTTTTGATGATAAATTCTTGAAC
ATTGAAGGTATGCAAGAATTTGTTGACGGTAAAGCATCAGACATCTCAGGTATCAAGAAAATCGATGACTACACAGTGGA
ATTGACTGTAAAAGAAATGTCACCTTCTATGATGTATGCGGGTGGTGATGTCCCAGCCTATATCCAACCAGAACACATCT
ATAAAGACATCCCTGTTGCAGACTGGGAAAAGAGCGAATACTCACGTACTGCTAAGCTTGTTGGTATGGGTCCGTGGAAG
ATTAAAGAAATTGTTAATGGTGAGTCTATCACTTACGTACCAAACGAATACTTCTTCAAGGGTACGAAACCAAAAACAAG
CTCATTGAAGATTGACATCGTATCTCCTGATACTATTGTTTCTGAAATGAAAGCGGGGAATTATGATATTGCTGACATGC
CAGTAGATCAGTTGGATTCATATAAAAAAGCATCTAACTTGAATATTGTTGGTTCTTTGGACTCAGCTTATGAATACATT
TCCTTTAATTTTGGTAAATATGACGAAGCAGCCGGTAAGAACGTTATGGACGAAAATGCCAAGATGAATGATGTGAAACT
TCGTCAAGCAATTGCCTATGCGATTGATACTAAGACAGCTGGTGAGTCATTGTACAATGGTCTTTACCACCCTGCAAAAT
CATTGATTATCTCATTCTTCGGCGATATTCATGATTCAGAGTTGGAAGGCTATTCATACAATCCTGAAAAAGCGAAAAAG
CTTTTGGATGAAGCTGGCTACAAAGATGTAGATGGCGATGGTATCCGTGAAGGCAAAGATGGTAAGGAATTCAAGATTAC
CTTTGCGGCTCGTAAACGTACTGAAGCTAACGAAGCGCTCGTACAACAATACATTGCTTGGTGGAAAGAAGTTGGCTTGA
ATGTCGAACTTTACACAGGACGTACAGTTGAAGGTAAGTCGTTCTATAACTCAGTTCAGGCTAATGATGCTGCTATTGAT
ATGTATGCTGGTGGATGGTCAACAGGTTACGATCCAAACCCAAGTGGTCTATGGGGACCTATCGCAGCCTTCAATATGTC
ACGTTTCGTGTCTGATGAAAACACTAAGTTATTGGAAGCAATTAGTTCGACAGAATCATTTGACGACAAGAAAAATGTTG
AGAACTATAAGGCTTGGCAAAAATATGCTTACGAACAAGCATTTGCTATTCCAACATTTGAATCTGAGTCAATTGTAGCA
CTTAACAAACGTGTGAAAAACTATGACACTAACTACGGTTCAGCTTCAGGTAAAGGTATCGCTCTTGAGAATATCGAACT
TACTGCTGATAAAGGTGTAGTGGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(109-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

95.134

100

0.951

Multiple sequence alignment