Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FORC36_RS15570 Genome accession   NZ_CP015512
Coordinates   3227715..3229238 (-) Length   507 a.a.
NCBI ID   WP_085761428.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_036     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3222715..3234238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC36_RS15550 (FORC36_2887) - 3224000..3224986 (+) 987 WP_085761427.1 serine/threonine protein kinase -
  FORC36_RS15555 (FORC36_2888) - 3225019..3225624 (+) 606 WP_011079070.1 thiol:disulfide interchange protein DsbA/DsbL -
  FORC36_RS15560 (FORC36_2889) - 3225678..3226559 (-) 882 WP_060532905.1 acyltransferase -
  FORC36_RS15565 (FORC36_2890) - 3226702..3227676 (+) 975 WP_045623571.1 DUF2860 domain-containing protein -
  FORC36_RS15570 (FORC36_2891) comM 3227715..3229238 (-) 1524 WP_085761428.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FORC36_RS15575 (FORC36_2892) ilvG 3229708..3231354 (+) 1647 WP_011151435.1 acetolactate synthase 2 catalytic subunit -
  FORC36_RS15580 (FORC36_2893) ilvM 3231366..3231650 (+) 285 WP_011079065.1 acetolactate synthase 2 small subunit -
  FORC36_RS15585 (FORC36_2894) ilvE 3231662..3232600 (+) 939 WP_085761429.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54723.88 Da        Isoelectric Point: 9.1030

>NTDB_id=180237 FORC36_RS15570 WP_085761428.1 3227715..3229238(-) (comM) [Vibrio vulnificus strain FORC_036]
MGLAIIHSRASVGVEAPSVSVEVHISNGLPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQISVQFLQQHEFVGELALSGELRAVKGVLPAALAAKGVSRSLVVPHANGDQAALVGKNMHKSACSL
IEVCAHLCGQQALSLHQTKQALQPSSHSRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSE
EEAMETAAVASLTQSDINEHNWKQRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSMREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARVNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTAVVKARVAQARERMQHRNGKVNALLGSREIEAFCPLSKQDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGAPQ
ITRAHLAEALGYRAMDRLLKQLTLQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=180237 FORC36_RS15570 WP_085761428.1 3227715..3229238(-) (comM) [Vibrio vulnificus strain FORC_036]
ATGGGGTTGGCGATTATTCATAGCCGCGCCAGTGTGGGCGTAGAAGCGCCTTCAGTGAGCGTGGAAGTGCACATCAGTAA
CGGTTTACCGGGATTTACCTTAGTGGGGTTGCCGGAAACCACCGTGAAGGAGTCAAAAGATCGCGTACGCAGTGCGATCG
TCAACAGTAACTTCCAATTTCCTGCCAAGCGGATCACCGTCAACTTGGCACCTGCCGATCTGCCCAAAGAAGGGGGACGT
TTTGACTTGCCGATCGCACTTGGCATTTTGGCCGCTTCTGAGCAGATCTCCGTTCAGTTTCTCCAACAACATGAATTTGT
CGGTGAGTTAGCCTTAAGTGGTGAGCTGCGAGCGGTGAAAGGGGTTTTGCCAGCCGCTCTTGCCGCCAAAGGGGTCTCCC
GCAGTTTGGTGGTACCTCATGCGAATGGGGATCAAGCCGCCTTGGTGGGTAAGAACATGCATAAGTCGGCGTGCTCGCTG
ATTGAAGTTTGTGCCCATTTATGTGGCCAGCAAGCCCTGTCATTACATCAAACCAAGCAAGCATTGCAGCCCTCATCACA
CAGTCGAGATTTACAAGACATCATTGGTCAGCAACAAGGAAAGCGCGCGTTGGAGATTGCCGCTGCGGGCAATCACAATT
TATTGTTTTTGGGGCCTCCAGGGACGGGTAAAACCATGCTGGCGTCACGTTTGCGAGATCTGTTGCCTGAAATGAGTGAG
GAAGAGGCGATGGAAACGGCAGCGGTGGCTTCTTTAACACAAAGCGATATCAACGAGCACAATTGGAAGCAGCGGCCATT
TCGCGCGCCGCATCACTCGAGTTCTATGGCGGCGCTGGTGGGCGGTGGAACCATTCCGCGTCCCGGAGAAATCTCACTCG
CACACAACGGCTTACTGTTTTTGGACGAGATGCCGGAATTTGAGCGCAAAGTGCTCGATTCAATGCGCGAGCCGCTAGAG
TCGGGGGAAATCATCATTTCACGAGCGCAAGGTAAAACTCGTTTTCCTGCTCGCTTTCAGTTGGTCGGTGCTTTGAATCC
GAGCCCAACGGGCTATTACGAAGGGAACCAAGCTCGCGTCAATCCTCAGGCGATTTTGCGTTATTTAGGCCGTTTATCGG
GTCCACTTTTGGATCGTTTTGATATGTCACTCGAGATCCCCGCATTACCCAAAGGCACATTGGCGGAAGGGGGGGACCGA
GGTGAACCAACTGCGGTGGTGAAGGCGCGAGTGGCGCAGGCGAGAGAGCGAATGCAGCATCGCAATGGTAAGGTGAATGC
CCTATTAGGCAGCCGAGAAATCGAAGCGTTTTGTCCACTAAGTAAGCAGGATGCCGAGTTTCTTGAAACAGCGTTGCATC
GTTTGGGGTTATCGATTCGTGCGTATCACCGCATCATCAAAGTGGCGCGAACCATTGCCGATTTAGAAGGCGCACCTCAG
ATCACGCGTGCGCACTTAGCCGAAGCACTCGGTTATCGGGCGATGGATCGCTTGCTCAAACAGCTCACTCTGCAAGCGGT
TTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

87.968

100

0.88
  comM Vibrio cholerae strain A1552

84.024

100

0.84
  comM Haemophilus influenzae Rd KW20

65.089

100

0.651
  comM Glaesserella parasuis strain SC1401

62.846

99.803

0.627
  comM Legionella pneumophila str. Paris

50.202

97.83

0.491
  comM Legionella pneumophila strain ERS1305867

50.202

97.83

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.432

Multiple sequence alignment