Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   FORC36_RS04525 Genome accession   NZ_CP015512
Coordinates   953858..954160 (+) Length   100 a.a.
NCBI ID   WP_013572179.1    Uniprot ID   A0AAN1PPQ8
Organism   Vibrio vulnificus strain FORC_036     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 948858..959160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC36_RS04510 (FORC36_0864) lon 948872..951223 (+) 2352 WP_011078147.1 endopeptidase La -
  FORC36_RS04515 (FORC36_0865) - 951417..951689 (+) 273 WP_013572181.1 HU family DNA-binding protein -
  FORC36_RS04520 (FORC36_0866) ppiD 951866..953725 (+) 1860 WP_013572180.1 peptidylprolyl isomerase -
  FORC36_RS04525 (FORC36_0867) comEA 953858..954160 (+) 303 WP_013572179.1 ComEA family DNA-binding protein Machinery gene
  FORC36_RS04530 (FORC36_0868) rrtA 954207..954791 (-) 585 WP_011078143.1 rhombosortase -
  FORC36_RS04535 (FORC36_0869) - 954771..955379 (+) 609 WP_011078142.1 tRNA-uridine aminocarboxypropyltransferase -
  FORC36_RS04540 (FORC36_0870) - 955401..956732 (-) 1332 WP_045623965.1 anti-phage deoxyguanosine triphosphatase -
  FORC36_RS04545 (FORC36_0871) yfbR 956738..957286 (-) 549 WP_231846899.1 5'-deoxynucleotidase -
  FORC36_RS04550 (FORC36_0872) - 957403..958617 (-) 1215 WP_011080966.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 10900.72 Da        Isoelectric Point: 9.6573

>NTDB_id=180205 FORC36_RS04525 WP_013572179.1 953858..954160(+) (comEA) [Vibrio vulnificus strain FORC_036]
MKQVFTLLAMLMAFSFPSVSFADSATKAADKYEGIEISVNINTATAEEIAMMLKGVGIKKAQQIVDFREANGPFKTVDEL
AQVKGIGKSTIEKNQSRIKL

Nucleotide


Download         Length: 303 bp        

>NTDB_id=180205 FORC36_RS04525 WP_013572179.1 953858..954160(+) (comEA) [Vibrio vulnificus strain FORC_036]
ATGAAACAGGTATTTACCCTTTTAGCCATGCTAATGGCATTCTCTTTTCCTTCCGTTTCTTTTGCGGACTCTGCAACGAA
AGCGGCCGATAAATATGAAGGCATTGAGATTTCCGTCAATATCAACACGGCGACAGCAGAAGAAATTGCCATGATGTTAA
AAGGCGTTGGTATTAAAAAAGCTCAGCAAATTGTTGACTTTAGAGAAGCTAATGGACCGTTTAAAACGGTTGATGAGTTA
GCTCAAGTGAAAGGAATCGGTAAATCAACGATTGAGAAAAATCAGTCACGGATTAAGTTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(38-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

59

100

0.59
  comEA Vibrio campbellii strain DS40M4

54

100

0.54
  comEA Vibrio cholerae C6706

52.041

98

0.51
  comEA Vibrio cholerae strain A1552

52.041

98

0.51
  comEA/comE1 Glaesserella parasuis strain SC1401

60

60

0.36

Multiple sequence alignment