Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | A6044_RS03765 | Genome accession | NZ_CP015432 |
| Coordinates | 704591..705784 (+) | Length | 397 a.a. |
| NCBI ID | WP_010945037.1 | Uniprot ID | Q7VM72 |
| Organism | [Haemophilus] ducreyi strain GHA5 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 699591..710784
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6044_RS03740 (A6044_03750) | - | 700290..700775 (+) | 486 | WP_010945031.1 | dihydrofolate reductase | - |
| A6044_RS03745 (A6044_03755) | - | 700897..701112 (+) | 216 | WP_010945033.1 | YgjV family protein | - |
| A6044_RS03750 (A6044_03760) | radA | 701179..702558 (-) | 1380 | WP_010945034.1 | DNA repair protein RadA | - |
| A6044_RS03755 (A6044_03765) | pilA | 702752..703201 (+) | 450 | WP_010945035.1 | prepilin peptidase-dependent pilin | Machinery gene |
| A6044_RS03760 (A6044_03770) | pilB | 703213..704607 (+) | 1395 | WP_064088541.1 | GspE/PulE family protein | Machinery gene |
| A6044_RS03765 (A6044_03775) | pilC | 704591..705784 (+) | 1194 | WP_010945037.1 | type II secretion system F family protein | Machinery gene |
| A6044_RS03770 (A6044_03780) | - | 705784..706476 (+) | 693 | WP_041603480.1 | prepilin peptidase | - |
| A6044_RS03775 (A6044_03785) | coaE | 706494..707111 (+) | 618 | WP_010945039.1 | dephospho-CoA kinase | - |
| A6044_RS03780 (A6044_03790) | yacG | 707114..707302 (+) | 189 | WP_010945040.1 | DNA gyrase inhibitor YacG | - |
| A6044_RS03785 (A6044_03795) | holA | 707336..708361 (-) | 1026 | WP_010945041.1 | DNA polymerase III subunit delta | - |
| A6044_RS03790 (A6044_03800) | lptE | 708367..708864 (-) | 498 | WP_010945042.1 | LPS assembly lipoprotein LptE | - |
Sequence
Protein
Download Length: 397 a.a. Molecular weight: 45721.33 Da Isoelectric Point: 10.1310
>NTDB_id=179602 A6044_RS03765 WP_010945037.1 704591..705784(+) (pilC) [[Haemophilus] ducreyi strain GHA5]
MLKIYEFHWRAFNRFNQRQKGKSLAKSHDELEQRLLAKGYSNIHIQRNFILVRKPKSEQITQLINQLAMLLNASVPLKQS
LVMVLENVHNIKLYLWLSEIIMLLEAGHAFSASLTKMNVYLTKQEIQLIQMGEQSGRLAIMLDNIAQVRNQSQKLANKVK
KIMFYPAIILAVSISVLIGLLLFIVPQFEDLYRNKDQSLPFITQLLFQLSNFLQQYAFILFIGGLFSGIVSYFLAKKWLF
WRTLRSRLLNHMPGFQQIIKDARIIFFSQNLALMLNAHIHLDATLKAFLSEHRQDPVLHQEILSILSLLKQGYKFSEGLN
PTVFTSQVVQMMAIGEQSGNLAKMCMYISQLYQQKLDYQIDLFAQLLEPVLMVVIGIIVGTILIGIYLPIFDMGALV
MLKIYEFHWRAFNRFNQRQKGKSLAKSHDELEQRLLAKGYSNIHIQRNFILVRKPKSEQITQLINQLAMLLNASVPLKQS
LVMVLENVHNIKLYLWLSEIIMLLEAGHAFSASLTKMNVYLTKQEIQLIQMGEQSGRLAIMLDNIAQVRNQSQKLANKVK
KIMFYPAIILAVSISVLIGLLLFIVPQFEDLYRNKDQSLPFITQLLFQLSNFLQQYAFILFIGGLFSGIVSYFLAKKWLF
WRTLRSRLLNHMPGFQQIIKDARIIFFSQNLALMLNAHIHLDATLKAFLSEHRQDPVLHQEILSILSLLKQGYKFSEGLN
PTVFTSQVVQMMAIGEQSGNLAKMCMYISQLYQQKLDYQIDLFAQLLEPVLMVVIGIIVGTILIGIYLPIFDMGALV
Nucleotide
Download Length: 1194 bp
>NTDB_id=179602 A6044_RS03765 WP_010945037.1 704591..705784(+) (pilC) [[Haemophilus] ducreyi strain GHA5]
ATGCTGAAAATATATGAATTTCATTGGCGGGCTTTTAATCGTTTTAATCAACGGCAAAAAGGTAAATCTCTGGCCAAAAG
TCACGATGAATTAGAACAACGGCTATTAGCTAAAGGCTATTCAAATATCCATATTCAACGTAATTTTATTTTAGTTAGGA
AACCAAAAAGCGAACAAATCACTCAATTAATTAATCAGTTAGCTATGTTATTGAATGCCTCGGTTCCATTAAAACAATCG
CTGGTGATGGTATTAGAAAACGTACATAATATTAAATTATATTTATGGCTATCTGAAATTATTATGCTGTTAGAAGCGGG
GCATGCTTTTTCAGCCAGTCTCACTAAAATGAACGTTTATTTGACTAAGCAAGAAATTCAGTTAATTCAGATGGGAGAAC
AGAGTGGGCGTTTAGCCATTATGCTAGATAACATTGCACAAGTACGTAATCAATCACAGAAATTAGCTAATAAAGTAAAG
AAAATTATGTTTTATCCGGCGATTATTTTAGCCGTATCAATTAGTGTATTAATTGGATTGTTATTATTTATTGTGCCTCA
ATTTGAAGATCTTTATCGTAACAAAGATCAGTCACTGCCTTTTATTACCCAATTATTATTTCAGTTATCGAATTTTCTTC
AACAATATGCATTTATTTTATTCATCGGCGGCCTATTTAGCGGTATTGTTAGCTATTTTTTAGCGAAAAAGTGGCTTTTT
TGGCGTACCTTAAGATCGCGTTTATTAAATCATATGCCAGGGTTTCAGCAAATTATTAAAGATGCTCGAATTATTTTCTT
TAGTCAAAATCTTGCGTTAATGCTTAATGCACATATTCATTTAGATGCAACGTTAAAAGCATTTTTATCAGAACATCGCC
AAGATCCGGTATTACATCAGGAGATTTTGAGTATATTAAGTTTATTAAAGCAAGGTTATAAATTCTCTGAGGGGCTTAAT
CCAACCGTATTTACTAGCCAAGTAGTACAAATGATGGCAATTGGCGAACAAAGTGGTAATTTGGCTAAAATGTGTATGTA
TATTAGTCAACTGTATCAGCAAAAACTGGATTACCAAATTGATTTGTTTGCTCAATTACTTGAACCGGTTTTAATGGTAG
TGATTGGCATTATTGTGGGGACGATTTTGATTGGGATTTATTTGCCTATTTTTGATATGGGAGCATTGGTGTAA
ATGCTGAAAATATATGAATTTCATTGGCGGGCTTTTAATCGTTTTAATCAACGGCAAAAAGGTAAATCTCTGGCCAAAAG
TCACGATGAATTAGAACAACGGCTATTAGCTAAAGGCTATTCAAATATCCATATTCAACGTAATTTTATTTTAGTTAGGA
AACCAAAAAGCGAACAAATCACTCAATTAATTAATCAGTTAGCTATGTTATTGAATGCCTCGGTTCCATTAAAACAATCG
CTGGTGATGGTATTAGAAAACGTACATAATATTAAATTATATTTATGGCTATCTGAAATTATTATGCTGTTAGAAGCGGG
GCATGCTTTTTCAGCCAGTCTCACTAAAATGAACGTTTATTTGACTAAGCAAGAAATTCAGTTAATTCAGATGGGAGAAC
AGAGTGGGCGTTTAGCCATTATGCTAGATAACATTGCACAAGTACGTAATCAATCACAGAAATTAGCTAATAAAGTAAAG
AAAATTATGTTTTATCCGGCGATTATTTTAGCCGTATCAATTAGTGTATTAATTGGATTGTTATTATTTATTGTGCCTCA
ATTTGAAGATCTTTATCGTAACAAAGATCAGTCACTGCCTTTTATTACCCAATTATTATTTCAGTTATCGAATTTTCTTC
AACAATATGCATTTATTTTATTCATCGGCGGCCTATTTAGCGGTATTGTTAGCTATTTTTTAGCGAAAAAGTGGCTTTTT
TGGCGTACCTTAAGATCGCGTTTATTAAATCATATGCCAGGGTTTCAGCAAATTATTAAAGATGCTCGAATTATTTTCTT
TAGTCAAAATCTTGCGTTAATGCTTAATGCACATATTCATTTAGATGCAACGTTAAAAGCATTTTTATCAGAACATCGCC
AAGATCCGGTATTACATCAGGAGATTTTGAGTATATTAAGTTTATTAAAGCAAGGTTATAAATTCTCTGAGGGGCTTAAT
CCAACCGTATTTACTAGCCAAGTAGTACAAATGATGGCAATTGGCGAACAAAGTGGTAATTTGGCTAAAATGTGTATGTA
TATTAGTCAACTGTATCAGCAAAAACTGGATTACCAAATTGATTTGTTTGCTCAATTACTTGAACCGGTTTTAATGGTAG
TGATTGGCATTATTGTGGGGACGATTTTGATTGGGATTTATTTGCCTATTTTTGATATGGGAGCATTGGTGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Glaesserella parasuis strain SC1401 |
51.637 |
100 |
0.516 |
| pilC | Haemophilus influenzae Rd KW20 |
40.75 |
100 |
0.411 |
| pilC | Haemophilus influenzae 86-028NP |
40.25 |
100 |
0.406 |