Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   S40542_RS19210 Genome accession   NZ_CP015413
Coordinates   4464230..4465741 (-) Length   503 a.a.
NCBI ID   WP_046355823.1    Uniprot ID   A0A0F6AD40
Organism   Pseudoalteromonas luteoviolacea strain S40542     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4459230..4470741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S40542_RS19195 (S40542_19195) - 4459654..4460733 (-) 1080 WP_046355820.1 hemolysin family protein -
  S40542_RS19200 (S40542_19200) - 4460862..4463315 (+) 2454 WP_046355821.1 prolyl oligopeptidase family serine peptidase -
  S40542_RS19205 (S40542_19205) - 4463529..4464233 (+) 705 WP_046355822.1 response regulator transcription factor -
  S40542_RS19210 (S40542_19210) comM 4464230..4465741 (-) 1512 WP_046355823.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  S40542_RS19215 (S40542_19215) - 4465820..4466434 (-) 615 WP_046355824.1 trimeric intracellular cation channel family protein -
  S40542_RS19220 (S40542_19220) - 4466961..4469546 (-) 2586 WP_046355825.1 M14 family zinc carboxypeptidase -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 55463.84 Da        Isoelectric Point: 8.0582

>NTDB_id=179330 S40542_RS19210 WP_046355823.1 4464230..4465741(-) (comM) [Pseudoalteromonas luteoviolacea strain S40542]
MSLAKTYTRAQVGVNAPLVTVEVHLSNGLPAFNIVGLPEASVKESKERVRCALTHCHFLFPEQRITVNLAPADLPKQGGR
YDLAIAIGILLASGQLQNTQIHEYEFYGELALTGEVREVTAVIPALIAAAKAQRCCFIPLSNKEMASLVTYGTRKSAGSL
RDVWMDLGGQQTLSFDEAMTCPDEDQFNMSIDMNEVKGQVVAKRVLEIAAAGAHNVLFLGPPGTGKSMLAQRMSTIMPPM
QIEQALETASVYSLIGKSIDPKKWRQRPFRSPHHTCSAVALVGGSSTPKPGEISLAHNGILFLDELPEYERKVLDSLREP
METGMVNISRAAQQVDFPARFQLIAALNPSPTGCHHDKRSTPDQVLRYLSKISGPFVDRIDLQIELPRLSTSELQSKGEV
EDSACIRARVVRARSAAIERQGKENAMLSTKELEKYCALSDRVSEYLAKATEKLQLSPRSYHRVVKVARTIADLNMHDVI
TLSDLKEALSYRAFERLLSQLTR

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=179330 S40542_RS19210 WP_046355823.1 4464230..4465741(-) (comM) [Pseudoalteromonas luteoviolacea strain S40542]
ATGTCACTAGCTAAAACTTATACTCGAGCACAAGTGGGCGTCAATGCACCACTGGTTACTGTGGAAGTTCACTTAAGTAA
TGGCTTACCTGCATTTAATATTGTTGGTTTGCCAGAAGCTTCGGTGAAAGAGTCAAAAGAGCGTGTGCGTTGTGCATTAA
CGCATTGTCACTTTTTATTTCCTGAGCAACGAATTACCGTTAATCTTGCCCCTGCTGATTTGCCCAAGCAAGGTGGGCGG
TATGATTTGGCTATTGCGATTGGTATTTTATTGGCTTCAGGTCAGCTTCAAAATACTCAAATACATGAGTACGAATTTTA
TGGCGAGTTAGCTTTGACAGGAGAGGTACGTGAGGTAACCGCGGTTATCCCCGCATTGATTGCTGCAGCAAAAGCGCAGC
GTTGTTGTTTTATACCTTTGTCGAATAAAGAGATGGCGAGCTTAGTCACTTATGGCACACGTAAATCGGCAGGTAGTTTG
CGAGATGTATGGATGGATTTAGGGGGACAACAAACATTGTCTTTTGATGAAGCCATGACGTGCCCTGATGAAGACCAATT
CAATATGTCTATTGATATGAATGAAGTGAAAGGTCAGGTAGTTGCGAAACGAGTGCTTGAAATTGCAGCGGCAGGAGCAC
ATAACGTTTTGTTTTTAGGCCCTCCAGGTACTGGAAAGTCGATGTTAGCCCAGCGGATGTCAACCATTATGCCACCCATG
CAAATAGAGCAAGCATTAGAAACTGCGTCGGTTTATTCATTGATTGGTAAAAGTATAGACCCCAAAAAGTGGCGTCAAAG
GCCCTTTCGTTCACCTCATCATACTTGTTCTGCTGTGGCATTAGTTGGAGGCTCTTCAACACCTAAGCCAGGGGAAATAT
CGCTGGCTCACAATGGGATTCTATTCCTTGATGAATTACCTGAGTATGAAAGAAAAGTATTAGACTCTTTACGAGAGCCG
ATGGAAACGGGCATGGTAAATATCTCGCGTGCAGCGCAACAGGTGGACTTCCCTGCGCGATTTCAGCTTATAGCAGCACT
TAATCCCAGTCCTACGGGATGCCATCATGATAAGCGCTCAACACCAGATCAAGTGTTGCGCTACTTAAGTAAAATATCAG
GGCCATTTGTTGATCGTATCGATCTGCAAATTGAGTTGCCAAGGCTCAGTACGTCAGAGTTGCAGTCAAAAGGTGAGGTA
GAGGATAGTGCATGTATTCGTGCGCGTGTTGTGCGGGCGCGTTCAGCCGCCATTGAACGCCAAGGAAAAGAAAATGCCAT
GCTTTCTACTAAAGAGCTTGAGAAGTACTGTGCATTGTCGGACAGGGTGAGTGAGTACTTGGCAAAAGCGACAGAAAAGC
TGCAGTTATCGCCTCGCTCATACCATCGAGTAGTTAAGGTAGCGAGAACGATCGCTGATCTAAATATGCATGATGTGATC
ACGTTATCAGATTTGAAAGAAGCACTCAGTTATCGCGCTTTTGAACGCTTACTTTCTCAATTGACACGTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F6AD40

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

54.118

100

0.549
  comM Vibrio cholerae strain A1552

54.455

100

0.547
  comM Glaesserella parasuis strain SC1401

52.953

100

0.535
  comM Vibrio campbellii strain DS40M4

52.767

100

0.531
  comM Legionella pneumophila str. Paris

48.594

99.006

0.481
  comM Legionella pneumophila strain ERS1305867

48.594

99.006

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.023

100

0.441

Multiple sequence alignment