Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   A6V27_RS06165 Genome accession   NZ_CP015379
Coordinates   1342333..1343859 (+) Length   508 a.a.
NCBI ID   WP_063587552.1    Uniprot ID   -
Organism   Hafnia alvei strain HUMV-5920     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1337333..1348859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6V27_RS06145 (A6V27_06155) - 1337463..1338395 (-) 933 WP_025802071.1 branched-chain amino acid transaminase -
  A6V27_RS06150 (A6V27_06160) ilvM 1338474..1338749 (-) 276 WP_063586060.1 acetolactate synthase 2 small subunit -
  A6V27_RS06155 (A6V27_06165) ilvG 1338746..1340392 (-) 1647 WP_063586061.1 acetolactate synthase 2 catalytic subunit -
  A6V27_RS21035 ilvL 1340533..1340631 (-) 99 WP_071778685.1 ilv operon leader peptide -
  A6V27_RS06160 (A6V27_06170) - 1340765..1341994 (-) 1230 WP_063586062.1 MFS transporter -
  A6V27_RS06165 (A6V27_06175) comM 1342333..1343859 (+) 1527 WP_063587552.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  A6V27_RS06170 (A6V27_06180) - 1343886..1344224 (-) 339 WP_025802063.1 DUF413 domain-containing protein -
  A6V27_RS06175 (A6V27_06185) hdfR 1344347..1345180 (+) 834 WP_063587553.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54888.26 Da        Isoelectric Point: 7.8353

>NTDB_id=179054 A6V27_RS06165 WP_063587552.1 1342333..1343859(+) (comM) [Hafnia alvei strain HUMV-5920]
MSVAMINTRAAIGVQAPAVSVEAHISTGLPGFTLVGLPEATVKEAKDRVRSAIINCGFAFPAKRITVNLAPADLPKEGGR
YDLPIAIAILIASEQLSATSVEGLELLGELGLSGALRRIQGAIPAAMAAQHHQRKLIAPEENEEELGLLGEQQPHLIANH
LLQVCDFLSGESPLLPPKVSQLSHQSPNTKDMRDIIGQEQARRALEIAATGGHNLLLLGPPGTGKTMLASRLNSILPPLT
TEEALESAAVASLVHQSTTGQSCYQRPFRTPHHSASMAALIGGGSLPRPGEISLAHNGVLFLDELPEFERRVLDALREPL
ESGEACISRALAKVTFPARVQLVAAMNPSPTGHYKGIHARTPPQQILKYLSRLSGPFLDRFDLSIEVPLLPAGVLSIQKR
VGESSEVIRQRVCLAREKQYQRSGKLNAHLAGKEMDRVCSLSQEDAAFLEQALEKMGLSVRAWHRILKVARSIADLAQSD
NISRIHIAEALSYRSMDRLIQHLHQALQ

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=179054 A6V27_RS06165 WP_063587552.1 1342333..1343859(+) (comM) [Hafnia alvei strain HUMV-5920]
ATGTCAGTGGCGATGATTAATACCCGTGCAGCAATCGGCGTGCAGGCACCCGCCGTGAGCGTTGAAGCACACATCAGCAC
CGGACTCCCCGGTTTTACATTAGTAGGTTTGCCTGAGGCGACAGTGAAAGAGGCTAAAGACCGCGTAAGAAGTGCCATCA
TAAATTGCGGTTTTGCTTTCCCTGCAAAACGTATCACGGTGAATTTGGCTCCCGCAGATCTTCCCAAAGAGGGCGGTCGC
TACGATCTTCCCATCGCAATCGCCATTTTGATTGCTTCTGAGCAGCTTAGCGCGACTTCGGTAGAAGGATTAGAGTTACT
CGGTGAATTGGGCCTTTCAGGCGCACTACGGCGCATTCAGGGCGCTATACCAGCAGCTATGGCCGCGCAGCATCATCAGC
GTAAATTAATCGCACCAGAGGAAAATGAGGAAGAGCTTGGCCTGCTTGGAGAACAACAGCCTCATCTCATTGCCAATCAT
CTACTTCAGGTTTGTGATTTTCTCAGCGGTGAATCACCGCTTCTCCCACCGAAGGTCTCTCAGCTATCCCACCAATCTCC
CAACACAAAGGATATGCGGGATATTATTGGCCAAGAACAGGCACGAAGAGCTTTAGAAATCGCCGCCACAGGCGGCCACA
ACTTATTGTTACTGGGGCCACCCGGCACAGGGAAAACTATGTTAGCCAGCCGCCTCAATAGCATATTGCCACCGTTAACC
ACCGAAGAAGCTTTAGAGAGTGCGGCGGTCGCTAGTTTGGTACATCAATCAACCACGGGGCAATCTTGCTACCAGCGACC
ATTTAGAACCCCACATCACAGTGCTTCAATGGCAGCACTCATCGGAGGTGGGTCTTTGCCAAGACCCGGAGAGATTTCTC
TCGCACATAACGGGGTATTATTTTTGGATGAACTGCCCGAGTTTGAACGGCGAGTGTTGGATGCTCTGCGCGAACCGCTT
GAGTCTGGCGAAGCATGCATTTCAAGGGCGCTGGCAAAAGTCACTTTCCCAGCAAGAGTACAATTAGTTGCTGCTATGAA
TCCAAGTCCGACAGGACATTACAAAGGCATTCATGCTCGTACACCACCACAGCAGATACTCAAATATCTATCCCGCTTAT
CAGGCCCATTTTTAGATCGTTTTGACCTATCTATTGAGGTGCCCCTGTTACCCGCAGGCGTTCTCAGCATTCAAAAACGC
GTTGGAGAAAGCAGCGAGGTTATTCGCCAACGAGTCTGTTTAGCACGAGAAAAACAGTATCAACGATCGGGAAAGCTCAA
CGCACACTTGGCAGGCAAAGAGATGGACAGGGTATGCTCACTATCTCAAGAAGATGCGGCGTTTCTGGAACAAGCGCTAG
AGAAGATGGGATTATCGGTAAGAGCTTGGCATCGAATACTAAAAGTTGCTCGTTCTATTGCCGATCTTGCACAAAGTGAC
AACATCAGCCGAATTCACATTGCAGAGGCACTCAGCTACCGCTCAATGGATCGTTTGATCCAACATCTCCATCAGGCACT
GCAATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

61.736

99.803

0.616
  comM Glaesserella parasuis strain SC1401

61.176

100

0.614
  comM Vibrio cholerae strain A1552

60.835

99.016

0.602
  comM Vibrio campbellii strain DS40M4

60.04

99.016

0.594
  comM Legionella pneumophila str. Paris

47.937

100

0.48
  comM Legionella pneumophila strain ERS1305867

47.937

100

0.48
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.284

97.835

0.463

Multiple sequence alignment