Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   A6P55_RS13955 Genome accession   NZ_CP015371
Coordinates   3110019..3110279 (-) Length   86 a.a.
NCBI ID   WP_081255914.1    Uniprot ID   -
Organism   Pandoraea pnomenusa strain MCB032     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3105019..3115279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6P55_RS13940 (A6P55_13930) - 3105308..3107125 (+) 1818 WP_150551824.1 hypothetical protein -
  A6P55_RS13945 (A6P55_13935) - 3107256..3107615 (+) 360 WP_063598863.1 hypothetical protein -
  A6P55_RS26350 (A6P55_13940) - 3108242..3109057 (+) 816 WP_231113166.1 tyrosine-type recombinase/integrase -
  A6P55_RS27015 - 3109092..3109397 (-) 306 WP_150551822.1 hypothetical protein -
  A6P55_RS26355 - 3109736..3109942 (+) 207 WP_231113327.1 helix-turn-helix domain-containing protein -
  A6P55_RS13955 (A6P55_13945) comM 3110019..3110279 (-) 261 WP_081255914.1 magnesium chelatase domain-containing protein Machinery gene
  A6P55_RS13960 (A6P55_13950) - 3110590..3110838 (-) 249 WP_024788671.1 accessory factor UbiK family protein -
  A6P55_RS13965 (A6P55_13955) - 3111247..3112074 (+) 828 WP_023872951.1 TorF family putative porin -
  A6P55_RS13970 (A6P55_13960) - 3112088..3112426 (+) 339 WP_010804740.1 P-II family nitrogen regulator -
  A6P55_RS13975 (A6P55_13965) amt 3112452..3113987 (+) 1536 WP_023597831.1 ammonium transporter -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 9495.00 Da        Isoelectric Point: 11.6142

>NTDB_id=178861 A6P55_RS13955 WP_081255914.1 3110019..3110279(-) (comM) [Pandoraea pnomenusa strain MCB032]
MTLAIVSSRAITGMAARPVTVEVHLANGLPGLSLVGLPDTEVKESRERVRSALQNSRFEFPARRITPIFRTSDVVSVERA
RKHDLI

Nucleotide


Download         Length: 261 bp        

>NTDB_id=178861 A6P55_RS13955 WP_081255914.1 3110019..3110279(-) (comM) [Pandoraea pnomenusa strain MCB032]
ATGACATTGGCCATCGTGAGCAGCCGGGCGATTACGGGCATGGCAGCGCGCCCGGTGACGGTCGAAGTCCATCTTGCGAA
CGGGCTCCCTGGCCTGTCGCTGGTGGGTCTGCCCGACACCGAAGTCAAGGAAAGCCGGGAGCGGGTACGCTCGGCATTGC
AGAACAGCCGGTTCGAATTTCCGGCGCGGCGCATCACCCCAATTTTCCGGACATCGGACGTAGTGTCAGTTGAAAGAGCA
CGGAAACACGACTTAATTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

64.865

86.047

0.558
  comM Vibrio campbellii strain DS40M4

58.108

86.047

0.5
  comM Haemophilus influenzae Rd KW20

62.121

76.744

0.477
  comM Glaesserella parasuis strain SC1401

60.606

76.744

0.465
  comM Legionella pneumophila str. Paris

59.091

76.744

0.453
  comM Legionella pneumophila strain ERS1305867

59.091

76.744

0.453

Multiple sequence alignment