Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   I596_RS00370 Genome accession   NZ_CP015249
Coordinates   97070..98572 (+) Length   500 a.a.
NCBI ID   WP_067642570.1    Uniprot ID   -
Organism   Dokdonella koreensis DS-123     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 92070..103572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I596_RS00350 (I596_74) - 93076..94740 (+) 1665 WP_067642559.1 MFS transporter -
  I596_RS00355 (I596_75) - 94873..95883 (-) 1011 WP_067642562.1 aldo/keto reductase -
  I596_RS00360 (I596_76) glnK 95924..96262 (-) 339 WP_067651199.1 P-II family nitrogen regulator -
  I596_RS00365 (I596_77) - 96630..96902 (+) 273 WP_067642566.1 accessory factor UbiK family protein -
  I596_RS00370 (I596_78) comM 97070..98572 (+) 1503 WP_067642570.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  I596_RS00375 (I596_79) - 98618..99778 (-) 1161 WP_067642573.1 putative peptide maturation dehydrogenase -
  I596_RS00380 (I596_80) - 99946..100227 (+) 282 WP_067642577.1 NHLP-related RiPP peptide -
  I596_RS00385 (I596_81) - 100288..102957 (-) 2670 WP_067642580.1 putative peptide modification system cyclase -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 53410.20 Da        Isoelectric Point: 8.5079

>NTDB_id=178031 I596_RS00370 WP_067642570.1 97070..98572(+) (comM) [Dokdonella koreensis DS-123]
MSLARVYSRAQDGVAAPLVTCEVHLSGGLPGTSIVGLPETAVKEARDRVRAAILTARFDYPARRITVNLAPADLPKDGGR
FDLPIALGILAANGNLPAAALAEHEFVGELALSGELRPIRGVLPAVLRAARSGRRVIVPRGNAAEAALVGAADVRAADTL
LDVCAHLAGRAELPVAVASDGSGEAPEDEPDLADVRGQPQARRALELAAAGMHNLLLVGPPGTGKTLLASRLPGILPPLE
EDEAIELAAIRSVAGLGGDLHGWKRRAFRSPHHTASAVALVGGGSIPRPGEVSLAHHGVLFLDELPEFDRHVLEVLREPL
ESGRIVISRAARQAEFPARFQLVAAMNPCPCGYAGDPSGRCRCASEQVARYRSRVSGPLLDRIDLKLEMPRVPLAELRAE
NAGESSASVKARVCAARMRQLRRAGKPNAWLGNREAERDCALRSSERHLFDRAVERLGLSARAYHRVLRLARTIADLADS
DRIEAPHLSEAIQYRRLDLH

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=178031 I596_RS00370 WP_067642570.1 97070..98572(+) (comM) [Dokdonella koreensis DS-123]
ATGAGCCTTGCCCGCGTCTACAGCCGCGCCCAGGATGGCGTCGCGGCTCCCCTGGTGACCTGCGAGGTGCATCTTTCGGG
CGGCCTGCCGGGCACCTCGATCGTCGGCCTGCCGGAAACGGCGGTGAAGGAAGCGCGCGACCGCGTCCGTGCGGCGATCC
TGACGGCCCGGTTCGACTATCCCGCCCGCCGGATCACCGTCAACCTCGCGCCGGCCGACCTTCCCAAGGATGGCGGGCGG
TTCGACCTACCGATCGCGCTCGGCATCCTCGCGGCCAACGGCAACCTGCCGGCGGCGGCGCTGGCGGAGCACGAGTTCGT
CGGCGAACTGGCGCTTTCCGGCGAGCTGCGGCCGATCCGGGGCGTCCTGCCGGCGGTGCTGCGTGCCGCCCGCAGCGGCC
GGCGCGTGATTGTCCCGCGCGGCAACGCGGCCGAGGCCGCGCTGGTCGGCGCGGCGGACGTGCGTGCGGCGGACACCCTG
CTCGACGTCTGCGCGCACCTGGCCGGCCGTGCGGAGCTGCCGGTGGCGGTCGCGTCGGACGGTTCCGGCGAAGCTCCCGA
GGACGAGCCCGACCTCGCCGACGTCCGTGGGCAGCCGCAGGCGCGCAGGGCATTGGAGCTGGCCGCGGCCGGTATGCACA
ACCTGCTGCTGGTCGGCCCTCCCGGTACCGGAAAGACGCTGCTGGCCAGCCGGCTTCCCGGCATTCTTCCGCCGCTCGAG
GAGGACGAGGCGATCGAGCTGGCCGCGATCCGGTCCGTTGCCGGCCTGGGAGGGGACCTGCACGGCTGGAAGCGGCGTGC
GTTCCGCAGTCCGCACCACACGGCTTCTGCCGTCGCCCTCGTCGGTGGCGGATCGATACCGCGTCCCGGCGAGGTCTCCC
TGGCCCATCACGGCGTGCTCTTCCTCGACGAGCTGCCGGAGTTCGACCGCCACGTGCTCGAAGTGCTGCGCGAGCCGTTG
GAATCGGGTCGCATCGTCATCTCGCGCGCCGCGCGCCAGGCCGAGTTCCCGGCCCGCTTCCAACTGGTCGCGGCGATGAA
CCCGTGTCCCTGCGGCTACGCCGGCGATCCGTCGGGCCGGTGCCGCTGCGCATCGGAACAGGTCGCGCGCTATCGGTCGC
GCGTGTCCGGGCCGCTGCTGGACCGGATCGACCTGAAGCTGGAGATGCCGCGGGTTCCGCTGGCCGAGCTGCGCGCGGAG
AATGCCGGCGAATCCAGCGCCTCGGTCAAGGCGCGCGTCTGCGCGGCGCGCATGCGCCAGCTCAGGCGTGCCGGCAAGCC
CAATGCCTGGCTGGGCAACCGGGAAGCCGAGCGCGACTGCGCCTTGCGCTCGAGCGAGAGACATCTGTTCGACCGGGCGG
TCGAGCGGCTCGGCCTTTCGGCGCGCGCCTATCACCGTGTATTGCGCCTGGCGCGCACGATCGCCGACCTCGCCGACAGC
GACCGCATCGAGGCGCCGCATCTGTCCGAGGCGATCCAGTACCGGCGCCTGGACCTGCACTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(22-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

56

100

0.56
  comM Glaesserella parasuis strain SC1401

55.05

100

0.556
  comM Vibrio cholerae strain A1552

55.311

99.8

0.552
  comM Vibrio campbellii strain DS40M4

54.91

99.8

0.548
  comM Legionella pneumophila str. Paris

49.004

100

0.492
  comM Legionella pneumophila strain ERS1305867

49.004

100

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.139

100

0.466

Multiple sequence alignment