Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BE948_RS23845 Genome accession   NZ_CP019005
Coordinates   4129111..4129626 (-) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain Ecol_AZ155     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4124111..4134626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE948_RS23820 (BE948_24445) ygaZ 4124510..4125247 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  BE948_RS23825 (BE948_24450) ygaH 4125237..4125572 (+) 336 WP_000119767.1 L-valine transporter subunit YgaH -
  BE948_RS23830 (BE948_24455) emrR 4125663..4126193 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  BE948_RS23835 (BE948_24460) emrA 4126320..4127492 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  BE948_RS23840 (BE948_24465) emrB 4127509..4129047 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  BE948_RS23845 (BE948_24470) luxS 4129111..4129626 (-) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  BE948_RS23850 (BE948_24475) gshA 4129776..4131332 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  BE948_RS23855 (BE948_24480) yqaA 4131405..4131833 (-) 429 WP_001287457.1 YqaA family protein -
  BE948_RS23860 (BE948_24485) yqaB 4131830..4132396 (-) 567 WP_000273305.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  BE948_RS23890 (BE948_24515) csrA 4133854..4134039 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=177897 BE948_RS23845 WP_001130210.1 4129111..4129626(-) (luxS) [Escherichia coli strain Ecol_AZ155]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=177897 BE948_RS23845 WP_001130210.1 4129111..4129626(-) (luxS) [Escherichia coli strain Ecol_AZ155]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment