Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A4308_RS01240 Genome accession   NZ_CP015227
Coordinates   262859..263386 (-) Length   175 a.a.
NCBI ID   WP_014882152.1    Uniprot ID   A0A145DXU8
Organism   Enterobacter sp. ODB01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 257859..268386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4308_RS01215 (A4308_01215) - 258483..259154 (-) 672 WP_023336606.1 glutathione S-transferase -
  A4308_RS01220 (A4308_01220) soxR 259536..259994 (-) 459 WP_014882155.1 redox-sensitive transcriptional activator SoxR -
  A4308_RS01225 (A4308_01225) soxS 260093..260419 (+) 327 WP_008503387.1 superoxide response transcriptional regulator SoxS -
  A4308_RS01230 (A4308_01230) - 260426..261991 (-) 1566 WP_023336605.1 EAL domain-containing protein -
  A4308_RS01235 (A4308_01235) - 262518..262799 (+) 282 WP_014882153.1 YjcB family protein -
  A4308_RS01240 (A4308_01240) ssb 262859..263386 (-) 528 WP_014882152.1 single-stranded DNA-binding protein SSB1 Machinery gene
  A4308_RS01245 (A4308_01245) uvrA 263638..266460 (+) 2823 WP_014882151.1 excinuclease ABC subunit UvrA -
  A4308_RS01250 (A4308_01250) - 266463..266816 (-) 354 WP_014882150.1 MmcQ/YjbR family DNA-binding protein -
  A4308_RS01255 (A4308_01255) - 266819..267235 (-) 417 WP_014882149.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  A4308_RS01260 (A4308_01260) aphA 267349..268062 (-) 714 WP_045281830.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18721.73 Da        Isoelectric Point: 5.2456

>NTDB_id=177794 A4308_RS01240 WP_014882152.1 262859..263386(-) (ssb) [Enterobacter sp. ODB01]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=177794 A4308_RS01240 WP_014882152.1 262859..263386(-) (ssb) [Enterobacter sp. ODB01]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACTG
AATGGCACCGCGTGGTGCTGTTTGGCAAACTGGCAGAAGTTGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGCACCCGTAAATGGACCGATCAGTCCGGCGCTGAGAAGTACACCACCGAAGTTGTGGTAAACGTTGG
CGGTACCATGCAGATGCTGGGCGGCCGTCAGGGCGGTGGCGCGCCAGCAGGTGGCGGTCAGCAGCAGCAGGGCGGTTGGG
GTCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGTGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCGGCA
CCGTCTAACGAGCCACCAATGGACTTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A145DXU8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.783
  ssb Glaesserella parasuis strain SC1401

56.522

100

0.594
  ssb Neisseria meningitidis MC58

46.629

100

0.474
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.474
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.366

Multiple sequence alignment