Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   A4H00_RS00125 Genome accession   NZ_CP015196
Coordinates   30758..31720 (-) Length   320 a.a.
NCBI ID   WP_067085789.1    Uniprot ID   -
Organism   Streptococcus marmotae strain HTS5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 25758..36720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4H00_RS00105 - 26066..26560 (-) 495 WP_067085778.1 LURP-one-related/scramblase family protein -
  A4H00_RS00110 prsA 26755..27747 (-) 993 WP_067085781.1 peptidylprolyl isomerase PrsA -
  A4H00_RS00115 - 27809..28528 (-) 720 WP_067085784.1 O-methyltransferase -
  A4H00_RS00120 pepF 28893..30695 (-) 1803 WP_067085786.1 oligoendopeptidase F Regulator
  A4H00_RS00125 coiA 30758..31720 (-) 963 WP_067085789.1 competence protein CoiA Machinery gene
  A4H00_RS00130 metG 31927..33924 (-) 1998 WP_067085792.1 methionine--tRNA ligase -
  A4H00_RS00135 - 34122..34949 (+) 828 WP_067085795.1 exodeoxyribonuclease III -
  A4H00_RS00140 - 34959..35339 (+) 381 WP_067085799.1 VOC family protein -
  A4H00_RS00145 - 35528..36115 (+) 588 WP_067085802.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 37986.59 Da        Isoelectric Point: 8.8021

>NTDB_id=177406 A4H00_RS00125 WP_067085789.1 30758..31720(-) (coiA) [Streptococcus marmotae strain HTS5]
MLVAKNEQGRSVHLLEQQAVDGQAFFCPGCGGPVRLRKGEVMRPHFAHISLKNCHYFSENESEQHLQLKTSLYQWALQDS
QAELEKRLPEIEQIADVFINDKLVLEIQCSSLPIRRLQERTYSYQQAGYRVVWLLGKDLWLKKRLTNLQRQFLYFSHRLG
FFLWELDREREKIRLRYLIHEDLHGQVQCLTQEFPLGVGNLLTILRFPYQGKKVAVLKGRLDRQIREYLARQLYHQSPKW
MGIQAQLYQEGGNLLTQTLDDFYPQIRLPESTIGFAQIEQDLSAYYAHFWEYYQQLDCKTEQYLYSPAFYQIKSRKKLGQ

Nucleotide


Download         Length: 963 bp        

>NTDB_id=177406 A4H00_RS00125 WP_067085789.1 30758..31720(-) (coiA) [Streptococcus marmotae strain HTS5]
ATGCTAGTTGCAAAAAATGAACAAGGACGGTCTGTCCACTTACTTGAACAGCAAGCGGTAGACGGTCAAGCATTTTTCTG
TCCCGGATGTGGTGGACCTGTACGCTTACGCAAAGGGGAAGTTATGCGCCCCCATTTTGCTCATATATCACTGAAAAATT
GCCATTATTTCTCAGAAAATGAATCGGAACAACATCTTCAGTTGAAGACAAGTTTGTATCAATGGGCTTTGCAAGATAGT
CAGGCAGAACTCGAAAAACGATTGCCAGAGATTGAGCAAATTGCAGATGTTTTTATTAATGATAAGCTGGTTCTTGAAAT
CCAATGTTCGAGTTTGCCGATAAGGCGGTTACAAGAGCGGACCTATTCTTATCAGCAGGCAGGTTACCGCGTTGTTTGGC
TATTGGGCAAGGACTTATGGCTGAAAAAGCGGTTGACGAATCTGCAGAGGCAATTTCTTTATTTTAGTCATCGCTTAGGA
TTTTTTCTTTGGGAATTGGATAGAGAGCGTGAAAAAATACGTTTGCGTTACCTTATTCATGAGGATTTGCACGGGCAAGT
GCAGTGCTTGACGCAGGAATTTCCCTTAGGGGTTGGAAATCTGCTAACGATACTGCGTTTTCCGTACCAAGGGAAAAAAG
TAGCCGTACTAAAAGGCAGGCTAGATAGGCAGATACGTGAATATTTAGCACGTCAGTTGTATCACCAATCTCCAAAATGG
ATGGGCATTCAAGCCCAACTCTACCAGGAAGGTGGCAATCTTCTTACTCAAACATTAGATGATTTTTACCCTCAGATTCG
TTTGCCAGAATCGACAATTGGATTTGCTCAGATTGAGCAAGATTTGTCTGCTTATTATGCTCATTTTTGGGAATATTATC
AGCAATTGGACTGCAAGACAGAGCAGTATCTCTACTCACCAGCATTTTATCAGATAAAGTCAAGGAAAAAACTCGGACAG
TAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

50.962

97.5

0.497
  coiA Streptococcus pneumoniae TIGR4

49.679

97.5

0.484
  coiA Streptococcus pneumoniae Rx1

49.359

97.5

0.481
  coiA Streptococcus pneumoniae D39

49.359

97.5

0.481
  coiA Streptococcus pneumoniae R6

49.359

97.5

0.481
  coiA Lactococcus lactis subsp. cremoris KW2

42.378

100

0.434

Multiple sequence alignment