Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   A4H00_RS00120 Genome accession   NZ_CP015196
Coordinates   28893..30695 (-) Length   600 a.a.
NCBI ID   WP_067085786.1    Uniprot ID   -
Organism   Streptococcus marmotae strain HTS5     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 23893..35695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4H00_RS00105 - 26066..26560 (-) 495 WP_067085778.1 LURP-one-related/scramblase family protein -
  A4H00_RS00110 prsA 26755..27747 (-) 993 WP_067085781.1 peptidylprolyl isomerase PrsA -
  A4H00_RS00115 - 27809..28528 (-) 720 WP_067085784.1 O-methyltransferase -
  A4H00_RS00120 pepF 28893..30695 (-) 1803 WP_067085786.1 oligoendopeptidase F Regulator
  A4H00_RS00125 coiA 30758..31720 (-) 963 WP_067085789.1 competence protein CoiA Machinery gene
  A4H00_RS00130 metG 31927..33924 (-) 1998 WP_067085792.1 methionine--tRNA ligase -
  A4H00_RS00135 - 34122..34949 (+) 828 WP_067085795.1 exodeoxyribonuclease III -
  A4H00_RS00140 - 34959..35339 (+) 381 WP_067085799.1 VOC family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68908.89 Da        Isoelectric Point: 4.5645

>NTDB_id=177405 A4H00_RS00120 WP_067085786.1 28893..30695(-) (pepF) [Streptococcus marmotae strain HTS5]
MTKQRSEIEEKYQWDLTTIFPTDEAWEGELAALQADVEKTAGFAGHLLDSAKSLLEISETQLELMRRMETLYVYASMKND
QDTREGKYQEFQAKALGLYSALSQAFAFYEPEFLEATEEQLAAFMEEEPALQQYSHQFEKLLAGKKHVLSQEVEEVLAAT
SEVFDAPSETFSVLDNASIRFPEVTNEEGELVPLSHGSYISFMESSNRAVRQEAYEGLYSTYEQFQHTYAKTLQANVKVN
NLKARLRKYDSARHAALSANFIPESVYDTLVEAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDVDYKFTYEDALA
KAADTLTIFGDEYSAQVKEAFENRWIDVHENEGKRSGAYSGGAYDTNAFMLLNWQDTLDNLYTLIHETGHSLHSMFTRKN
QPYVYGHYSIFLAEIASTTNENILTEKLLSEVEDDKTRFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQESQVLTAEF
LNNLYSEINEKYYGLSAEENPQIQFEWARIPHFYYNFYVYQYATGFAAASALSHKIVHGSPEDKEHYLAYLKAGSSDYPL
NVIKKAGVDMTKEDYLNDAFKVFEARLTELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=177405 A4H00_RS00120 WP_067085786.1 28893..30695(-) (pepF) [Streptococcus marmotae strain HTS5]
ATGACAAAACAACGTAGTGAAATTGAAGAAAAATACCAGTGGGACTTGACCACCATTTTTCCAACGGATGAAGCATGGGA
AGGCGAGCTGGCTGCCCTACAAGCTGATGTAGAAAAGACAGCAGGATTTGCTGGCCACTTGCTTGATTCAGCAAAGAGTT
TACTAGAAATTAGTGAGACGCAATTAGAGCTCATGCGCCGTATGGAAACACTTTATGTCTATGCTTCAATGAAAAATGAC
CAAGATACACGTGAAGGAAAATACCAAGAATTTCAAGCGAAGGCTTTAGGACTCTATTCAGCCCTTTCACAAGCTTTTGC
CTTCTATGAACCAGAATTCTTAGAAGCGACAGAAGAGCAACTGGCGGCTTTCATGGAAGAAGAACCAGCTTTGCAACAGT
ACAGCCACCAATTTGAGAAACTATTAGCAGGCAAGAAACACGTCCTATCTCAAGAAGTAGAAGAAGTATTAGCTGCAACA
AGTGAAGTGTTCGATGCACCGTCAGAAACCTTTTCTGTTCTTGATAATGCTAGCATTCGTTTCCCAGAGGTTACCAACGA
AGAAGGTGAACTTGTACCGCTTTCGCATGGTAGTTACATTTCGTTTATGGAATCAAGCAACCGTGCCGTTCGTCAAGAAG
CCTATGAAGGTCTGTATAGCACGTATGAGCAATTCCAACACACCTATGCGAAGACCTTGCAAGCCAATGTTAAAGTCAAT
AATTTAAAGGCTCGCTTGCGGAAGTATGACAGCGCTCGCCATGCAGCCTTGTCTGCTAACTTTATTCCAGAGTCTGTTTA
CGATACTTTGGTAGAGGCGGTCAATAAACATCTGCCACTCTTGCATCGTTATATCAATTTGCGGAAGAAATTATTGGGAA
TTGACGATTTGAAAATGTACGATATGTACACACCGCTTTCAGATGTTGATTACAAATTCACCTATGAAGATGCTTTAGCT
AAGGCTGCAGATACCTTAACAATTTTTGGTGATGAATACAGTGCCCAAGTTAAGGAAGCCTTTGAAAATCGTTGGATTGA
TGTCCATGAAAATGAAGGAAAACGCTCAGGAGCTTACTCTGGAGGAGCTTATGATACCAATGCTTTCATGCTCTTGAACT
GGCAAGATACGCTCGATAATCTCTATACTCTCATCCATGAAACAGGGCATTCACTTCATTCCATGTTTACACGTAAGAAT
CAGCCGTATGTGTATGGCCATTATTCTATTTTCTTGGCAGAAATTGCTTCTACGACCAACGAAAATATTCTGACAGAAAA
ACTATTGTCAGAAGTTGAAGATGATAAGACACGCTTTGCTATTCTCAATCATTATTTGGATGGCTTCCGTGGTACAGTAT
TCCGTCAGACACAATTTGCTGAGTTTGAGCAGGCAATCTACAAAGCTGATCAAGAAAGTCAAGTGTTGACAGCTGAATTT
TTGAATAATTTATATAGTGAAATCAACGAGAAATACTATGGTTTATCTGCTGAGGAAAACCCACAAATTCAATTTGAATG
GGCTCGCATTCCGCATTTTTACTATAATTTCTACGTGTACCAATATGCGACAGGTTTTGCAGCAGCTTCTGCCCTTTCTC
ATAAGATTGTACATGGGAGTCCAGAAGACAAGGAACATTATCTGGCTTACCTCAAGGCAGGAAGTTCAGATTATCCATTA
AATGTCATCAAAAAAGCAGGCGTTGACATGACAAAAGAAGACTACCTGAACGATGCCTTCAAGGTCTTTGAAGCCCGTTT
GACAGAGCTAGAAGCTCTAGTTGAAAAAGGTGTTCATTTGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.167

100

0.692

Multiple sequence alignment