Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AYJ58_RS04500 Genome accession   NZ_CP015194
Coordinates   986876..988402 (-) Length   508 a.a.
NCBI ID   WP_106649161.1    Uniprot ID   -
Organism   Shewanella sp. Pdp11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 981876..993402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYJ58_RS04475 (AYJ58_04390) prpB 982544..983422 (-) 879 WP_106649158.1 methylisocitrate lyase -
  AYJ58_RS04480 (AYJ58_04395) - 983474..984241 (-) 768 WP_006084449.1 GntR family transcriptional regulator -
  AYJ58_RS04485 (AYJ58_04400) - 984565..984904 (+) 340 Protein_858 DUF523 domain-containing protein -
  AYJ58_RS04490 (AYJ58_04405) - 984912..985856 (-) 945 WP_106649159.1 acyltransferase -
  AYJ58_RS04495 (AYJ58_04410) - 985864..986766 (-) 903 WP_106649160.1 acyltransferase -
  AYJ58_RS04500 (AYJ58_04415) comM 986876..988402 (-) 1527 WP_106649161.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AYJ58_RS04505 (AYJ58_04420) - 988617..989765 (+) 1149 WP_106649162.1 DUF1963 domain-containing protein -
  AYJ58_RS04510 (AYJ58_04425) - 990460..991488 (+) 1029 WP_106649163.1 ABC transporter substrate-binding protein -
  AYJ58_RS04515 (AYJ58_04430) - 991534..993318 (+) 1785 WP_106651744.1 GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55434.85 Da        Isoelectric Point: 8.1069

>NTDB_id=177384 AYJ58_RS04500 WP_106649161.1 986876..988402(-) (comM) [Shewanella sp. Pdp11]
MAIACVNTRASCGVEAPQVTVEVHLSNGLPAFNLVGLPEASVKEARERVRSALINAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAVGILAASEQIPLNSLKNLEFVGELALSGHIRYCQGLLPAIIAAKRQDHTLILPLDNRHDAELVGYPNVLFGSHL
QSLAAYLQGQNQLPTLAPQLEWISQETPESHTCLSDVIGQYQAKQALEIAAAGNHNLLMLGPPGTGKTMLASRMMALLPA
LNYEEALEVAAIHSVAGLDIKPQHFLQRPFRAPHHTSSSISLVGGGSIPKPGEISLAHRGVLFLDEVAEFPRKVLDCLRE
PMETGEVVISRAAAKLTFLSRFQLIAAMNPSPSGDIDSQHRSSPEQIQRYLSRLSGPFLDRFDLTIEVPKLPAGTLTQAA
PQTETSQDIAKRVKLARELQLARAGVLNSELTGKQLKRFSGLSDADLVFLEQSVVKLGLSVRSFHRIQRVARTIADLEQV
PNTERRHIAQALGYRAMDRLLARLSQQY

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=177384 AYJ58_RS04500 WP_106649161.1 986876..988402(-) (comM) [Shewanella sp. Pdp11]
ATGGCGATTGCCTGCGTCAATACCCGAGCCAGTTGTGGGGTCGAAGCGCCCCAAGTCACAGTTGAGGTGCATCTGAGCAA
CGGCTTACCGGCATTTAATCTGGTGGGATTACCTGAAGCGTCGGTAAAAGAAGCTCGCGAGCGGGTGCGCAGCGCGCTGA
TCAATGCGGGATTCGAGTTTCCAATGCGGCGGATAACCGTTAACCTCGCGCCAGCAGATTTACCTAAACAAGGTGGCCGC
TACGACTTACCCATAGCCGTAGGCATATTGGCCGCATCAGAACAAATCCCCCTTAATAGCCTAAAAAATCTCGAGTTTGT
CGGTGAACTGGCATTGTCTGGACACATACGTTATTGCCAAGGATTATTACCGGCGATTATCGCCGCAAAGCGCCAAGACC
ATACCTTGATATTGCCGCTGGATAATCGCCACGATGCCGAGTTAGTCGGCTATCCCAATGTGTTGTTTGGCTCGCACCTG
CAGAGTCTGGCCGCTTATTTACAGGGACAAAACCAACTGCCGACGTTAGCGCCACAATTAGAATGGATAAGCCAAGAGAC
GCCCGAGTCCCATACTTGCCTGAGCGATGTGATTGGCCAATATCAGGCCAAGCAAGCACTCGAAATTGCCGCTGCGGGTA
ACCACAACCTCTTGATGCTAGGCCCGCCGGGTACTGGCAAGACCATGCTTGCCAGCCGCATGATGGCGCTATTGCCCGCG
CTCAATTATGAGGAAGCGTTAGAAGTGGCGGCAATTCATTCCGTTGCTGGGCTCGACATTAAACCGCAGCATTTTTTACA
GCGACCCTTTCGGGCGCCGCACCACACGAGTTCTTCGATTTCCCTCGTGGGTGGTGGCAGTATTCCAAAACCCGGTGAAA
TTTCCCTCGCCCATCGCGGTGTATTATTCTTGGATGAAGTGGCTGAATTTCCGCGTAAAGTCTTAGATTGCCTGCGTGAG
CCGATGGAAACTGGCGAAGTGGTGATTTCCCGCGCCGCCGCTAAGCTGACATTTTTGAGTCGCTTCCAATTAATCGCGGC
GATGAATCCCAGCCCGAGTGGCGATATCGATAGCCAACACAGATCGAGCCCCGAACAGATTCAACGTTATCTTTCGCGGC
TTTCAGGCCCGTTTCTCGACCGTTTCGATTTAACCATTGAAGTCCCCAAACTCCCCGCGGGCACCTTAACTCAAGCCGCG
CCGCAAACAGAGACCAGCCAAGATATCGCCAAACGAGTGAAACTAGCGCGTGAGCTGCAACTCGCCCGCGCTGGCGTGCT
CAATAGTGAACTCACAGGGAAACAATTGAAACGCTTTAGCGGACTCAGTGACGCTGATTTAGTGTTTTTGGAGCAAAGCG
TGGTAAAGCTTGGCCTCTCGGTTCGCAGTTTTCATCGTATACAAAGAGTTGCGCGTACTATTGCCGATCTTGAACAAGTG
CCTAACACAGAACGCCGCCATATTGCCCAAGCACTGGGTTATCGCGCTATGGATAGATTACTCGCCCGCTTATCCCAGCA
ATATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.863

100

0.571
  comM Haemophilus influenzae Rd KW20

56.496

100

0.565
  comM Glaesserella parasuis strain SC1401

56.213

99.803

0.561
  comM Vibrio campbellii strain DS40M4

55.599

100

0.557
  comM Legionella pneumophila str. Paris

46.562

100

0.467
  comM Legionella pneumophila strain ERS1305867

46.562

100

0.467
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.75

97.638

0.427

Multiple sequence alignment