Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IEC338SC_RS03425 Genome accession   NZ_CP015145
Coordinates   712659..714146 (-) Length   495 a.a.
NCBI ID   WP_063097965.1    Uniprot ID   -
Organism   Acinetobacter pittii strain IEC338SC     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 707659..719146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IEC338SC_RS03405 (IEC338SC_0686) - 707705..708583 (-) 879 WP_063097961.1 dihydrodipicolinate synthase family protein -
  IEC338SC_RS03410 (IEC338SC_0687) - 708599..709375 (-) 777 WP_063097962.1 aldolase -
  IEC338SC_RS03415 (IEC338SC_0688) - 709487..710917 (+) 1431 WP_063097963.1 PLP-dependent aminotransferase family protein -
  IEC338SC_RS03420 (IEC338SC_0689) - 711205..712560 (-) 1356 WP_063097964.1 ankyrin repeat domain-containing protein -
  IEC338SC_RS03425 (IEC338SC_0690) comM 712659..714146 (-) 1488 WP_063097965.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IEC338SC_RS03430 (IEC338SC_0691) - 714212..714439 (-) 228 WP_002121136.1 accessory factor UbiK family protein -
  IEC338SC_RS03435 (IEC338SC_0692) glnK 714718..715056 (+) 339 WP_000780326.1 P-II family nitrogen regulator -
  IEC338SC_RS03440 (IEC338SC_0693) amtB 715114..716508 (+) 1395 WP_005079483.1 ammonium transporter -
  IEC338SC_RS03445 (IEC338SC_0694) nrdR 716633..717091 (+) 459 WP_000543541.1 transcriptional regulator NrdR -
  IEC338SC_RS03450 (IEC338SC_0695) ribD 717107..718192 (+) 1086 WP_063097966.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54485.68 Da        Isoelectric Point: 7.7209

>NTDB_id=177091 IEC338SC_RS03425 WP_063097965.1 712659..714146(-) (comM) [Acinetobacter pittii strain IEC338SC]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIAIGILIASGQLPENCAEDFELIGELALDGHVRPVSGTLTLAMACQQAKHKMLLPLDNSQDISHLPNLECYPVSHL
KEVCDHFLGIKLLSLIEPATTSNQMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTAVRQRVIYAYKQQMQRQDCLNQALSPKQLEQYAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEVIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=177091 IEC338SC_RS03425 WP_063097965.1 712659..714146(-) (comM) [Acinetobacter pittii strain IEC338SC]
ATGTCTTTTTCTAAAATTTATACACGGGGACTTTTAGGTTTACATGCACCTCTGATTGAAGTTGAGGTACATGTGAGTCA
AGGCTTACCTTCTCTTACTATTGTCGGCCTAGCAGAGGCGGCGGTAAGAGAAAGTAAAGACCGAGTTCGCTCAGCCATTA
TTAATAGTGGATTTCAATTTCCAACTAAAAGATTGACCATTAATCTTGCACCAGCAGATTTGCCCAAAGATGGATCACGT
CTAGATTTACCTATTGCTATAGGTATTTTAATTGCATCTGGCCAGCTCCCAGAAAACTGTGCCGAAGATTTTGAATTAAT
TGGTGAATTAGCTTTAGATGGCCATGTAAGACCAGTATCAGGTACTTTAACTTTGGCAATGGCATGTCAACAGGCCAAGC
ATAAAATGCTTTTACCTCTCGATAATAGTCAGGATATTAGCCATTTACCGAATCTTGAATGTTATCCCGTGAGCCATTTA
AAAGAAGTTTGTGATCATTTCTTGGGCATAAAATTACTATCTTTGATTGAACCTGCAACGACCTCAAACCAAATGCCTTA
TAAATTTGATCTGGCAGATGTAAAAGGTCAGCTACGTCCACGTCGCGCACTAGAAATTGCCGCCGCAGGCGGGCACTCGC
TGCTCTTTAAAGGGCCACCAGGGACAGGTAAGACTTTACTCGCTTCACGTCTTCCTTCAATTTTGCCACCGCTTTCTAAT
CAGGAAACGCTTGAAGTCGCGAGTATTTATTCTATTTCAAATACACCGCATACCTTTGGACAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCCATTGCACTAGTTGGGGGCGGTTCACATCCTAAACCGGGTGAAATTACCTTATCTCATTTAG
GAGTTTTGTTTTTAGATGAACTCCCCGAGTTTGACAGAAAAGTTCTAGAAGTCTTACGTCAGCCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCAGCTCGGCAAATTACCTATCCTGCAAACTTTCAGCTCATTGCAGCGATGAACCCTTGCCCATG
TGGTTATGCGTTTAATCAAGACAGCCGTTGCCAATGTTCGCCAGAGAGTATCAAGCGCTATCAAAACCGTATATCGGGGC
CATTACTTGACCGTATCGATTTACATATTGATGTACCGCCTTTAAAAGCTCAAGAACTGCAAGATCCAACGCCTGCTGAA
GACTCTACGGCTGTAAGACAGCGTGTGATTTATGCTTATAAACAACAAATGCAAAGACAAGATTGTTTAAATCAAGCACT
TTCACCGAAACAACTTGAGCAATATGCTGTACTTGATAGTACTTCTCAACGAATGATTGAAATGGCTCAGCAACGTTTGA
ATCTGTCGGCTCGTGCTTATCATCGCGTTTTACGGGTTGCTCGTACTATTGCCGATTTGGCCCAAAGTGAGGTCATTCAA
AGTCCTCATCTTACAGAAGCGCTCTCTTATCGAGGCAATCATTCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.806

100

0.509
  comM Glaesserella parasuis strain SC1401

50.1

100

0.505
  comM Legionella pneumophila strain ERS1305867

49.4

100

0.499
  comM Legionella pneumophila str. Paris

49.4

100

0.499
  comM Haemophilus influenzae Rd KW20

48.898

100

0.493
  comM Vibrio campbellii strain DS40M4

47.879

100

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.924

100

0.467

Multiple sequence alignment