Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A3780_RS26995 Genome accession   NZ_CP015113
Coordinates   5669967..5670500 (+) Length   177 a.a.
NCBI ID   WP_007372442.1    Uniprot ID   -
Organism   Kosakonia radicincitans strain GXGL-4A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5664967..5675500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3780_RS26975 (A3780_26290) aphA 5665306..5666016 (+) 711 WP_007372438.1 acid phosphatase AphA -
  A3780_RS26980 (A3780_26295) - 5666086..5666502 (+) 417 WP_007372439.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  A3780_RS26985 (A3780_26300) - 5666505..5666873 (+) 369 WP_007372440.1 MmcQ/YjbR family DNA-binding protein -
  A3780_RS26990 (A3780_26305) uvrA 5666877..5669702 (-) 2826 WP_071921813.1 excinuclease ABC subunit UvrA -
  A3780_RS26995 (A3780_26310) ssb 5669967..5670500 (+) 534 WP_007372442.1 single-stranded DNA-binding protein SSB1 Machinery gene
  A3780_RS27000 (A3780_26315) - 5670561..5671100 (-) 540 WP_083565939.1 chorismate mutase -
  A3780_RS27005 (A3780_26320) - 5671254..5672027 (-) 774 WP_007372444.1 amino acid ABC transporter substrate-binding protein -
  A3780_RS27010 (A3780_26325) - 5672052..5672819 (-) 768 WP_007372445.1 amino acid ABC transporter ATP-binding protein -
  A3780_RS27015 (A3780_26330) - 5672797..5673492 (-) 696 WP_007372446.1 amino acid ABC transporter permease -
  A3780_RS27020 (A3780_26335) - 5673869..5674633 (+) 765 WP_007372447.1 IclR family transcriptional regulator -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18851.84 Da        Isoelectric Point: 5.2456

>NTDB_id=176750 A3780_RS26995 WP_007372442.1 5669967..5670500(+) (ssb) [Kosakonia radicincitans strain GXGL-4A]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSSA
PAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=176750 A3780_RS26995 WP_007372442.1 5669967..5670500(+) (ssb) [Kosakonia radicincitans strain GXGL-4A]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAGCAGACCGGCGAAATGAAAGAGCAGACAG
AATGGCACCGCGTTGTGCTGTTCGGCAAGCTGGCGGAAGTGGCCGGTGAGTATCTGCGTAAAGGCTCTCAGGTTTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTGAACGTGGG
CGGCACCATGCAGATGCTGGGCGGTCGTCAGGGCGGCGGCGCACCGGCAGGCGGGGCAGGCGGTGGCCAGCAGCAGGGCG
GTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGTCTTCCGCT
CCGGCACCGTCTAACGAACCGCCGATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.774
  ssb Glaesserella parasuis strain SC1401

56.989

100

0.599
  ssb Neisseria meningitidis MC58

46.927

100

0.475
  ssb Neisseria gonorrhoeae MS11

46.927

100

0.475
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.667

100

0.373

Multiple sequence alignment