Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AMD27_RS00900 Genome accession   NZ_CP015110
Coordinates   210932..212419 (-) Length   495 a.a.
NCBI ID   WP_067655085.1    Uniprot ID   A0A145WLI0
Organism   Acinetobacter sp. TGL-Y2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 205932..217419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD27_RS00875 (AMD27_00875) - 206113..206511 (+) 399 WP_067655074.1 MAPEG family protein -
  AMD27_RS00880 (AMD27_00880) ppa 206636..207172 (+) 537 WP_067655077.1 inorganic diphosphatase -
  AMD27_RS00885 (AMD27_00885) - 207303..208619 (-) 1317 WP_067655080.1 OprD family outer membrane porin -
  AMD27_RS00890 (AMD27_00890) - 209013..209780 (+) 768 WP_067662646.1 TorF family putative porin -
  AMD27_RS00895 (AMD27_00895) - 210142..210873 (+) 732 WP_067655083.1 TorF family putative porin -
  AMD27_RS00900 (AMD27_00900) comM 210932..212419 (-) 1488 WP_067655085.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AMD27_RS00905 (AMD27_00905) - 212508..212735 (-) 228 WP_067655087.1 accessory factor UbiK family protein -
  AMD27_RS00910 (AMD27_00910) glnK 213006..213344 (+) 339 WP_004650081.1 P-II family nitrogen regulator -
  AMD27_RS00915 (AMD27_00915) - 213404..214807 (+) 1404 WP_067655089.1 ammonium transporter -
  AMD27_RS00920 (AMD27_00920) nrdR 214940..215404 (+) 465 WP_067655091.1 transcriptional regulator NrdR -
  AMD27_RS00925 (AMD27_00925) ribD 215534..216631 (+) 1098 WP_067655093.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54363.09 Da        Isoelectric Point: 7.5996

>NTDB_id=176693 AMD27_RS00900 WP_067655085.1 210932..212419(-) (comM) [Acinetobacter sp. TGL-Y2]
MSFAKIYTRGLLGLHAPQIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENSTDDFEFIGELALDGHLRAASGTLTIAMACQAAQHKLMLPLENAEEAAQLPDFKVFSASSL
KQVCDHFLKVHEIDAFSSNSTHKKNEYKFDLADVKGQLRPRRALEIAAAGGHSILFKGPPGTGKTLLASRLSSILPPLNA
QENLEVASIYSIASAQHQFGQRPFRAPHHTASAVALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQMTFPANFQFIAAMNPCPCGYAFNQDSRCQCSAESIKRYQNRISGPLLDRIDLHIDVPPLNPQDLQDTKPVE
NSETVRQRVILAYELQIARQGFLNQALSPQQLEKFVQLDDAAQRIMATAQQRLNLSARAYHRILRVARTIADLAQSESIQ
NSHLTEALSYRSQHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=176693 AMD27_RS00900 WP_067655085.1 210932..212419(-) (comM) [Acinetobacter sp. TGL-Y2]
ATGTCTTTTGCCAAAATTTACACTCGAGGCTTACTGGGTTTACATGCCCCGCAGATCGAAGTTGAAGTACATGTCAGCCA
AGGTCTGCCCTCTCTCACTATTGTCGGGTTGGCCGAAGCTGCCGTTCGAGAAAGTAAGGATCGGGTTCGCTCCGCGATCA
TTAACAGTGGTTTTCAATTTCCGACTAAACGCTTAACCATTAACCTCGCTCCGGCAGATCTACCCAAAGATGGCTCTCGG
CTTGATCTGCCCATTGCCTTGGGCATTTTGATTGCATCGGGTCAATTACCTGAAAACAGCACGGATGACTTCGAATTTAT
TGGTGAATTGGCATTAGACGGTCATCTCAGAGCAGCATCGGGTACTTTAACCATTGCCATGGCATGCCAAGCAGCTCAAC
ATAAACTCATGCTTCCACTTGAAAATGCTGAAGAAGCCGCACAATTACCTGATTTTAAGGTTTTTTCAGCATCGAGTTTA
AAACAGGTCTGTGATCATTTTTTAAAAGTGCACGAAATTGATGCATTTTCATCCAACAGTACACATAAAAAAAATGAATA
TAAATTTGATTTGGCGGATGTTAAAGGTCAACTCAGACCTAGGCGTGCTTTGGAAATTGCAGCCGCTGGCGGGCATTCGA
TTTTATTTAAAGGTCCTCCGGGGACGGGTAAAACCTTATTGGCTTCTCGTCTGTCGAGTATTTTACCGCCACTCAATGCT
CAAGAAAATTTAGAAGTCGCGAGTATCTACTCGATTGCCAGTGCACAACATCAATTTGGTCAGCGCCCCTTTCGAGCACC
ACATCACACGGCATCTGCTGTTGCATTGGTTGGTGGAGGTTCACATCCAAAACCGGGTGAAATCACCTTGGCGCATTTGG
GCGTGTTATTTTTAGATGAACTACCTGAGTTTGACCGAAAGGTCTTAGAGGTTTTAAGGCAACCTTTAGAATCCAAAGAA
ATCGTGATCTCGCGTGCTTCAAGGCAGATGACTTTCCCCGCCAATTTTCAATTTATTGCTGCAATGAACCCTTGTCCATG
TGGTTATGCTTTTAATCAGGACAGTCGTTGTCAGTGTTCGGCTGAATCTATCAAACGTTATCAGAACCGAATTTCAGGAC
CATTACTGGATCGTATCGATTTACATATCGATGTTCCACCACTCAACCCGCAAGACTTACAAGATACAAAGCCAGTTGAA
AACTCGGAAACCGTCAGACAACGCGTAATTCTTGCCTATGAATTACAAATTGCAAGACAAGGCTTCTTAAACCAAGCCCT
TTCTCCCCAGCAATTGGAAAAATTTGTTCAATTGGATGATGCCGCTCAGCGCATTATGGCCACCGCACAGCAGCGTTTAA
ATTTATCTGCACGGGCATATCATCGTATTTTACGTGTTGCGCGTACCATTGCTGACTTGGCTCAAAGTGAATCTATACAA
AATAGTCATTTGACTGAAGCACTGTCTTATCGAAGTCAGCACTCCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A145WLI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.403

100

0.505
  comM Glaesserella parasuis strain SC1401

49.4

100

0.499
  comM Legionella pneumophila str. Paris

49.597

100

0.497
  comM Legionella pneumophila strain ERS1305867

49.597

100

0.497
  comM Vibrio campbellii strain DS40M4

49.395

100

0.495
  comM Haemophilus influenzae Rd KW20

48.902

100

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.72

100

0.475

Multiple sequence alignment