Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   A4G13_RS10275 Genome accession   NZ_CP015031
Coordinates   2207488..2208705 (-) Length   405 a.a.
NCBI ID   WP_165898036.1    Uniprot ID   -
Organism   Basfia succiniciproducens strain JF4016     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2202488..2213705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4G13_RS10245 (A4G13_10175) raiA 2203249..2203569 (-) 321 WP_011199534.1 ribosome-associated translation inhibitor RaiA -
  A4G13_RS10250 (A4G13_10180) - 2203818..2205209 (-) 1392 WP_011199535.1 sodium:alanine symporter family protein -
  A4G13_RS10255 (A4G13_10185) - 2205619..2205891 (-) 273 WP_090654049.1 GNAT family N-acetyltransferase -
  A4G13_RS10260 (A4G13_10190) yacG 2205908..2206126 (-) 219 WP_011199540.1 DNA gyrase inhibitor YacG -
  A4G13_RS10265 (A4G13_10195) coaE 2206104..2206748 (-) 645 WP_090654048.1 dephospho-CoA kinase -
  A4G13_RS10270 (A4G13_10200) - 2206775..2207491 (-) 717 WP_090654046.1 A24 family peptidase -
  A4G13_RS10275 (A4G13_10205) pilC 2207488..2208705 (-) 1218 WP_165898036.1 type II secretion system F family protein Machinery gene
  A4G13_RS10280 (A4G13_10210) pilB 2208702..2210102 (-) 1401 WP_090654044.1 GspE/PulE family protein Machinery gene
  A4G13_RS10285 (A4G13_10215) pilA 2210116..2210568 (-) 453 WP_011199546.1 prepilin peptidase-dependent pilin Machinery gene
  A4G13_RS10290 (A4G13_10220) ampD 2210675..2211244 (+) 570 WP_102030684.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  A4G13_RS10295 (A4G13_10225) - 2211382..2211852 (+) 471 WP_011199548.1 surface-adhesin E family protein -
  A4G13_RS10300 (A4G13_10230) era 2211927..2212880 (-) 954 WP_090654043.1 GTPase Era -
  A4G13_RS10305 (A4G13_10235) rnc 2212877..2213551 (-) 675 WP_090654041.1 ribonuclease III -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 46599.08 Da        Isoelectric Point: 9.5995

>NTDB_id=176334 A4G13_RS10275 WP_165898036.1 2207488..2208705(-) (pilC) [Basfia succiniciproducens strain JF4016]
MTLKRYRWKALNRLKQTQSGFILAESDIQAKQNLLARNLYEIKLQQDWQLRYKVSNAEICDVLNQLATLLDAQIPLKESL
HILIQNCSSIPLNQWLRNLLSQLERGFAFSKSIELQGLYLSAQELQLIKVGEMSGKLSYVCSQIAHFRQQQLALQRKIQK
ILLYPLVVLVISATLTLLLLIFIVPQFAEMYQDNNQDLPFITKFLLVLSHSLTHYIWYITGVTTLTFIFIKKQWRHSIWL
YKCTQQLMALMPLISTIKQQARLINFCRSLQLMLNAGIPLQQGLQAFLPQIKTWQNTGALPSDLILVEEVQAILHWIKQG
YGFSNSVGSRLFPQQAQQILQVGESSGQLSNILQKIADDYQQQLDHKIDLLSQLLEPFLMLLIGIIIGVIMLGMYLPIFN
MGNIM

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=176334 A4G13_RS10275 WP_165898036.1 2207488..2208705(-) (pilC) [Basfia succiniciproducens strain JF4016]
ATGACATTAAAACGCTATCGCTGGAAAGCGCTCAATCGGCTAAAACAAACCCAATCAGGCTTTATTCTGGCGGAATCGGA
CATTCAGGCAAAACAAAACCTGCTGGCGCGAAATTTATATGAAATCAAGCTGCAACAAGATTGGCAACTTAGGTACAAAG
TAAGCAATGCAGAAATTTGTGATGTGCTGAACCAACTGGCGACATTATTGGATGCTCAAATCCCCTTAAAAGAAAGCCTG
CATATTCTTATCCAAAATTGCAGTTCGATTCCGTTGAATCAGTGGTTACGCAATTTATTATCGCAATTGGAACGCGGCTT
TGCTTTTTCCAAGTCCATTGAACTGCAAGGATTATATCTCTCAGCCCAAGAGTTACAGTTGATTAAAGTAGGTGAAATGA
GCGGAAAACTAAGTTATGTTTGCAGCCAAATTGCTCATTTTCGCCAACAGCAATTGGCATTACAACGAAAAATACAAAAA
ATTCTGCTTTACCCTTTGGTGGTGCTTGTTATATCTGCGACGCTAACATTATTGCTATTAATATTTATCGTACCTCAATT
TGCCGAAATGTATCAGGATAACAACCAAGATCTCCCGTTCATCACTAAATTTTTGTTAGTTTTATCGCACAGTTTAACTC
ATTATATTTGGTATATAACCGGTGTCACCACATTAACTTTTATATTTATCAAAAAACAGTGGCGTCATTCAATATGGTTA
TATAAATGCACCCAACAACTCATGGCATTAATGCCGCTCATAAGTACCATTAAACAGCAGGCAAGGCTGATTAATTTCTG
TCGCAGCCTGCAATTAATGTTAAACGCAGGTATTCCGCTACAACAAGGATTACAGGCTTTTCTGCCGCAGATCAAAACAT
GGCAAAACACCGGCGCTTTGCCCAGTGATCTTATCTTAGTTGAAGAAGTTCAAGCTATTTTACATTGGATAAAGCAAGGT
TACGGCTTTTCTAACAGCGTAGGAAGCCGTCTGTTTCCTCAACAGGCACAACAAATTTTGCAGGTGGGTGAAAGTTCCGG
TCAACTAAGCAACATTCTGCAAAAAATTGCCGACGATTATCAGCAACAACTTGATCACAAAATCGATTTGCTTTCCCAAT
TGCTCGAACCTTTTCTAATGCTGCTCATCGGCATTATCATTGGTGTAATTATGCTCGGAATGTATCTTCCTATTTTTAAT
ATGGGGAATATAATGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(63-185)

Type II secretion system (T2SS), protein F (T2SSF)

(266-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

53.056

100

0.536
  pilC Haemophilus influenzae 86-028NP

52.567

100

0.531
  pilC Glaesserella parasuis strain SC1401

38.903

99.012

0.385

Multiple sequence alignment