Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   A4G13_RS07265 Genome accession   NZ_CP015031
Coordinates   1590700..1592232 (+) Length   510 a.a.
NCBI ID   WP_090655557.1    Uniprot ID   -
Organism   Basfia succiniciproducens strain JF4016     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1585700..1597232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4G13_RS07250 (A4G13_07225) glpB 1587160..1588455 (+) 1296 WP_090655569.1 glycerol-3-phosphate dehydrogenase subunit GlpB -
  A4G13_RS07255 (A4G13_07230) glpC 1588465..1589742 (+) 1278 WP_090655565.1 anaerobic glycerol-3-phosphate dehydrogenase subunit GlpC -
  A4G13_RS07260 (A4G13_07235) yihA 1589947..1590564 (+) 618 WP_090655561.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  A4G13_RS07265 (A4G13_07240) comM 1590700..1592232 (+) 1533 WP_090655557.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  A4G13_RS07275 (A4G13_07250) yccS 1592631..1594817 (+) 2187 WP_090655554.1 YccS family putative transporter -
  A4G13_RS07280 (A4G13_07255) rplQ 1595158..1595541 (-) 384 WP_011201180.1 50S ribosomal protein L17 -
  A4G13_RS07285 (A4G13_07260) rpoA 1595577..1596566 (-) 990 WP_011201181.1 DNA-directed RNA polymerase subunit alpha -
  A4G13_RS07290 (A4G13_07265) rpsD 1596599..1597219 (-) 621 WP_011201182.1 30S ribosomal protein S4 -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 55924.16 Da        Isoelectric Point: 10.0492

>NTDB_id=176327 A4G13_RS07265 WP_090655557.1 1590700..1592232(+) (comM) [Basfia succiniciproducens strain JF4016]
MSLAIVYTRASMGIQAPLVTIEVHISNGKPGFTLVGLPEKTVKEAQDRVRSALINTQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGMLAASGQIDADKLRRFEFIGELALTGNLRGVHGVIPAILAARQAKRYAVIAAQNANEAALISDQESFFATSL
LEVVQFLNEQNKLPSTSDLTPQSAKNGSSTITKDLTDIISQQHAKRALIIAAAGQHNLLFLGPPGTGKTMLASRLTDLLP
EMTNQEAIETASVTSLVHNELNFTNWKQRPFRAPHHSASPAALVGGGTIPKPGEISLVHNGVLFLDELPEFERRVLDALR
QPLESGEIIISRATAKIQFPAKFQLIAAMNPSPTGNYQGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPKGALQS
SDNRGETSAQIRQRILQVREIQLTRAGKVNAHLSGKEIERDCKLSTQDSIFLENALTKLGLSVRAYHRILKVSRTIADLD
NELHISQRHIAEALGYRAMDRLLQKLNNND

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=176327 A4G13_RS07265 WP_090655557.1 1590700..1592232(+) (comM) [Basfia succiniciproducens strain JF4016]
ATGTCTCTTGCCATTGTTTACACCCGAGCCTCCATGGGCATTCAAGCGCCATTGGTCACCATTGAAGTACATATCAGTAA
CGGGAAACCGGGGTTCACCTTGGTCGGTTTACCGGAAAAAACGGTAAAAGAAGCGCAGGATCGCGTACGTAGCGCCCTGA
TTAACACGCAATTTAAATATCCGGCGAAACGGATTACAGTGAACCTTGCACCGGCTGATCTGCCAAAAGAAGGCGGACGT
TTCGATTTGCCTATTGCTATCGGTATGCTTGCCGCTTCAGGGCAAATTGATGCGGATAAATTGCGTCGGTTTGAATTTAT
CGGCGAGTTGGCCTTAACGGGAAATTTGCGCGGCGTTCACGGCGTTATTCCGGCTATTCTCGCCGCACGACAGGCTAAAA
GATATGCTGTTATCGCCGCTCAAAATGCCAATGAGGCGGCATTAATTTCCGATCAGGAAAGTTTCTTCGCTACATCATTA
CTTGAAGTAGTACAATTTTTAAATGAACAAAACAAACTGCCGTCCACCTCTGATTTAACGCCTCAATCAGCAAAAAACGG
CTCCTCAACAATTACAAAAGATTTAACGGATATTATCAGCCAGCAACACGCTAAACGAGCACTGATTATTGCAGCGGCCG
GACAGCACAATCTGCTTTTCTTAGGTCCGCCCGGCACCGGGAAAACAATGCTTGCCAGCCGCTTAACCGATCTTTTACCG
GAAATGACCAATCAAGAGGCAATCGAAACCGCCTCTGTCACCAGCCTTGTGCATAATGAATTGAATTTTACTAATTGGAA
ACAACGCCCTTTCCGGGCTCCTCATCATAGCGCTTCACCGGCGGCGTTGGTCGGCGGAGGGACCATTCCCAAACCGGGAG
AAATATCGCTGGTACATAACGGTGTGCTATTTTTAGACGAATTACCCGAATTTGAACGGCGGGTTTTGGATGCCTTGCGT
CAACCTTTGGAAAGCGGGGAAATCATTATTTCCCGTGCTACGGCGAAAATTCAATTTCCGGCTAAATTCCAACTTATTGC
GGCTATGAACCCAAGCCCTACTGGTAATTATCAGGGAACCCATAACAGAACTTCCCCGCAACAAATTATGCGTTATTTAA
ACCGGTTATCCGGGCCTTTTCTTGATCGTTTTGACTTGTCAATTGAAGTACCGCTATTGCCTAAAGGCGCTTTGCAGAGT
TCGGATAACCGCGGCGAAACCAGTGCGCAGATTCGACAGAGAATCTTGCAGGTGCGGGAAATCCAATTAACCAGAGCCGG
TAAAGTTAATGCTCATTTAAGCGGCAAAGAAATTGAACGAGATTGTAAATTAAGTACTCAGGATTCCATATTTCTGGAAA
ATGCCTTAACAAAATTAGGGCTTTCCGTGCGCGCCTATCACAGAATTCTAAAAGTGTCGCGCACTATTGCCGATCTGGAC
AACGAACTCCATATCAGTCAGCGCCATATTGCGGAAGCCTTGGGATACCGCGCGATGGACAGGCTTTTACAAAAGCTGAA
CAACAACGATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

81.102

99.608

0.808
  comM Glaesserella parasuis strain SC1401

76.134

99.412

0.757
  comM Vibrio cholerae strain A1552

65.286

99.412

0.649
  comM Vibrio campbellii strain DS40M4

63.834

99.216

0.633
  comM Legionella pneumophila str. Paris

50.298

98.627

0.496
  comM Legionella pneumophila strain ERS1305867

50.298

98.627

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.358

100

0.475

Multiple sequence alignment