Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   HPYLPMSS1_RS05700 Genome accession   NZ_CP018823
Coordinates   1177826..1178599 (+) Length   257 a.a.
NCBI ID   WP_077232327.1    Uniprot ID   -
Organism   Helicobacter pylori PMSS1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1172826..1183599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPYLPMSS1_RS05695 (HPYLPMSS1_01103) hopL 1174117..1177812 (+) 3696 WP_077232326.1 Hop family outer membrane protein HopL -
  HPYLPMSS1_RS05700 (HPYLPMSS1_01104) proC 1177826..1178599 (+) 774 WP_077232327.1 pyrroline-5-carboxylate reductase Machinery gene
  HPYLPMSS1_RS05705 (HPYLPMSS1_01105) fic 1178627..1179160 (+) 534 WP_003016818.1 protein adenylyltransferase Fic -
  HPYLPMSS1_RS05710 (HPYLPMSS1_01106) ybeY 1179406..1179828 (-) 423 WP_077232328.1 rRNA maturation RNase YbeY -
  HPYLPMSS1_RS05715 (HPYLPMSS1_01107) - 1179883..1180377 (-) 495 WP_077232329.1 flavodoxin -
  HPYLPMSS1_RS05720 (HPYLPMSS1_01108) - 1180467..1181048 (-) 582 WP_097701426.1 DedA family protein -
  HPYLPMSS1_RS05725 (HPYLPMSS1_01109) ccoS 1181171..1181362 (+) 192 WP_001090949.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  HPYLPMSS1_RS05730 (HPYLPMSS1_01110) - 1181389..1182363 (+) 975 WP_077232330.1 NAD(P)-binding domain-containing protein -
  HPYLPMSS1_RS05735 (HPYLPMSS1_01111) - 1182370..1183530 (-) 1161 WP_077232331.1 HP1165 family MFS efflux transporter -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28176.84 Da        Isoelectric Point: 8.3369

>NTDB_id=176290 HPYLPMSS1_RS05700 WP_077232327.1 1177826..1178599(+) (proC) [Helicobacter pylori PMSS1]
MEILQFIGYGNMAQAILEGAHEILSKRFILEITGRNPEKIAPFLQEKNIQAQIVPYKDAINIHQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVSFEALSNAINSLHYLKCMPNIASKFALSSTAVCEKSVAPSISEKALNIIESFGNCVRVSHEEQVD
ASIATNGSVLAFLSLVASGLKDAGIREGLNAKDSLELVEMSFKGFAKLLEKERPEVIIEQICTPKGATIEGLSVLEKKGV
RGAFIKACHESVKKMRL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=176290 HPYLPMSS1_RS05700 WP_077232327.1 1177826..1178599(+) (proC) [Helicobacter pylori PMSS1]
ATGGAAATCTTACAATTCATCGGCTATGGGAACATGGCTCAAGCGATTTTAGAAGGCGCTCATGAAATTTTATCCAAGCG
TTTTATTTTAGAGATTACTGGGCGAAACCCTGAAAAAATCGCCCCCTTTTTACAAGAAAAAAACATTCAAGCCCAAATCG
TGCCTTACAAAGACGCTATTAATATACACCAAAAATTCGTGTTTTTATTGTTTAAGCCTTATAACCTTAAGGATTTTAAT
TATCAAGGGCAAGCTAAAAGCGTTTTGAGCGCTTTAGCTGGCGTGAGTTTTGAAGCTTTAAGCAATGCGATTAATTCTTT
ACATTACTTAAAATGCATGCCTAACATTGCGAGCAAGTTCGCCCTATCTTCTACGGCGGTGTGTGAAAAATCGGTTGCGC
CTTCAATAAGCGAGAAAGCTTTGAATATTATTGAGAGTTTTGGGAATTGCGTGCGAGTGAGCCATGAAGAGCAGGTGGAT
GCCAGTATAGCGACCAATGGGAGCGTGCTCGCGTTTTTGAGCTTGGTAGCGAGCGGTTTGAAAGACGCCGGCATTAGAGA
GGGCTTGAACGCTAAAGATTCTTTAGAGTTGGTGGAAATGAGTTTTAAAGGCTTTGCCAAGCTGTTAGAAAAAGAACGCC
CTGAGGTGATTATAGAGCAAATTTGCACCCCTAAAGGCGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGGGGAGCGTTTATAAAAGCATGCCATGAAAGCGTGAAAAAAATGCGCCTCTAA

Domains

Predicted by InterProScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

36.614

98.833

0.362

Multiple sequence alignment