Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BTR42_RS03780 Genome accession   NZ_CP018822
Coordinates   697691..699349 (+) Length   552 a.a.
NCBI ID   WP_013642836.1    Uniprot ID   A0A060RKY8
Organism   Streptococcus gallolyticus subsp. gallolyticus DSM 16831     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 692691..704349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTR42_RS03750 (BTR42_03420) - 693148..693699 (+) 552 WP_012961636.1 L,D-transpeptidase -
  BTR42_RS03755 (BTR42_03425) xseA 694001..695329 (+) 1329 WP_009853716.1 exodeoxyribonuclease VII large subunit -
  BTR42_RS03760 (BTR42_03430) - 695319..695534 (+) 216 WP_003063737.1 exodeoxyribonuclease VII small subunit -
  BTR42_RS03765 (BTR42_03435) - 695534..696403 (+) 870 WP_077496474.1 polyprenyl synthetase family protein -
  BTR42_RS03770 (BTR42_03440) - 696396..697220 (+) 825 WP_013642835.1 TlyA family RNA methyltransferase -
  BTR42_RS03775 (BTR42_03445) - 697207..697677 (+) 471 WP_009853719.1 arginine repressor -
  BTR42_RS03780 (BTR42_03450) recN 697691..699349 (+) 1659 WP_013642836.1 DNA repair protein RecN Machinery gene
  BTR42_RS03785 (BTR42_03455) - 699486..700322 (+) 837 WP_012961642.1 DegV family protein -
  BTR42_RS03790 (BTR42_03460) - 700315..701163 (+) 849 WP_077496476.1 SGNH/GDSL hydrolase family protein -
  BTR42_RS03795 (BTR42_03465) - 701132..701734 (+) 603 WP_009853723.1 YpmS family protein -
  BTR42_RS03800 (BTR42_03470) - 701829..702104 (+) 276 WP_009853724.1 HU family DNA-binding protein -
  BTR42_RS03805 (BTR42_03475) - 702297..702503 (+) 207 WP_077496478.1 hypothetical protein -

Sequence

Protein


Download         Length: 552 a.a.        Molecular weight: 62292.46 Da        Isoelectric Point: 4.4702

>NTDB_id=176181 BTR42_RS03780 WP_013642836.1 697691..699349(+) (recN) [Streptococcus gallolyticus subsp. gallolyticus DSM 16831]
MLLEISIKNFAIIEEISLTFENGMTVLTGETGAGKSIIIDAMNLMLGARASLDVIRHGANKAEIEGLFSVGENPALTQIL
EENGIDVTEELIIRRDILQNGRSIGRINGQMVNLTTLRAVGQYLVDIHGQHDQEELMKPNMHIRMLDEFGNEQFADVKKH
YQELFESYRQLRKRVVTKQKNEQEHKARIEMLEFQIAEIEAAALKAGEDQALNQKRDKLLNHKNIADTLTNAYVMLDDEE
FSSLSNIRSAMNDLMTLEEFDADYKEMSANVSEAYYILEEVTKHLGDVIDDLDFDAGSLQQIEARLEVIYSITRKYGGSV
DDVLEYYDNITKEYNLLTGSDESSDDMEKALKRLEKELIVAAEELSQERHALAKDLEAEIKQELADLYMEKADFQVQFTK
GKFNRDGNEAVEFYISTNPGEGFKPLVKVASGGEISRLMLAIKSAFSRKEDKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
SNGQVLAISHLPQVIAIADYQFFIEKRSDENTTVSTVRLLTEEERVEEIAKMLAGSDITEMAREQARELLKK

Nucleotide


Download         Length: 1659 bp        

>NTDB_id=176181 BTR42_RS03780 WP_013642836.1 697691..699349(+) (recN) [Streptococcus gallolyticus subsp. gallolyticus DSM 16831]
ATGCTTTTAGAAATTTCCATTAAAAATTTTGCCATTATCGAAGAAATCTCGCTCACTTTTGAAAATGGTATGACGGTTTT
GACAGGGGAAACTGGAGCGGGGAAATCGATTATTATTGATGCCATGAACCTCATGTTGGGGGCGCGGGCTAGTCTTGACG
TTATTCGTCATGGGGCTAACAAGGCTGAAATTGAAGGGCTTTTTTCGGTTGGTGAAAATCCTGCGCTCACACAGATTTTG
GAAGAAAATGGCATTGATGTGACAGAAGAATTGATTATTCGCCGTGACATTCTGCAAAATGGTCGTTCTATCGGTCGTAT
CAACGGACAAATGGTGAATCTGACAACGTTACGTGCTGTTGGGCAGTATCTCGTTGATATTCATGGGCAGCATGACCAAG
AAGAATTGATGAAGCCAAATATGCACATTCGGATGTTGGATGAATTTGGTAATGAACAGTTTGCTGATGTCAAAAAACAT
TATCAAGAGCTTTTTGAAAGCTATCGTCAATTGCGTAAGCGTGTCGTGACCAAGCAAAAAAATGAACAAGAGCATAAAGC
GCGTATTGAAATGCTAGAATTTCAGATAGCAGAGATTGAAGCGGCAGCCTTGAAAGCTGGTGAGGACCAAGCACTCAACC
AAAAACGTGATAAATTGCTTAATCATAAAAACATTGCAGATACGTTGACCAATGCTTATGTCATGCTTGATGACGAAGAA
TTTTCAAGTCTGTCTAACATTCGTTCAGCCATGAATGATTTGATGACGCTCGAAGAATTTGATGCTGACTATAAAGAAAT
GTCAGCCAACGTTTCAGAAGCTTACTATATCTTAGAAGAAGTAACGAAACACCTAGGTGATGTCATTGATGACCTTGATT
TTGATGCGGGAAGTTTGCAACAAATCGAAGCGCGCCTAGAGGTGATTTATAGCATTACACGCAAATATGGCGGTAGTGTT
GATGATGTTTTAGAGTATTATGATAATATCACCAAGGAATACAATCTTTTGACTGGAAGTGATGAGTCATCTGATGATAT
GGAAAAAGCCCTTAAACGCTTGGAAAAAGAATTGATTGTTGCTGCTGAAGAACTCAGTCAAGAACGTCATGCCTTGGCTA
AAGATTTGGAAGCTGAAATCAAGCAAGAATTGGCTGATTTGTACATGGAAAAGGCTGATTTTCAAGTCCAATTCACCAAA
GGGAAATTCAATCGTGATGGCAATGAAGCTGTTGAATTTTACATTTCAACAAACCCTGGTGAAGGCTTCAAACCACTCGT
TAAAGTTGCGTCTGGCGGCGAAATTTCTCGCTTGATGTTGGCTATTAAATCGGCATTTTCACGTAAAGAGGACAAGACAA
GTATCGTCTTTGACGAAGTGGATACTGGTGTATCTGGTCGCGTTGCGCAAGCTATTGCTCAAAAAATCTATAAAATCGGA
AGTAACGGACAAGTCTTGGCAATATCGCATTTGCCACAAGTGATTGCTATTGCTGATTATCAGTTCTTTATCGAAAAACG
CAGTGATGAAAATACGACTGTTTCAACGGTTCGCTTGTTGACCGAAGAAGAACGGGTGGAAGAAATCGCTAAAATGCTTG
CTGGTAGCGATATTACCGAAATGGCGCGTGAACAAGCTCGCGAACTTTTGAAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A060RKY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.937

100

0.453

Multiple sequence alignment