Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | AYO71_RS26005 | Genome accession | NZ_CP014947 |
| Coordinates | 5794626..5795498 (+) | Length | 290 a.a. |
| NCBI ID | WP_041477817.1 | Uniprot ID | - |
| Organism | Pseudomonas koreensis strain D26 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5789626..5800498
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AYO71_RS25980 (AYO71_25980) | - | 5789871..5790170 (+) | 300 | WP_041477821.1 | DUF2845 domain-containing protein | - |
| AYO71_RS25985 (AYO71_25985) | - | 5790406..5790759 (-) | 354 | WP_016773155.1 | BON domain-containing protein | - |
| AYO71_RS25990 (AYO71_25990) | pilA/pilAI | 5791055..5791477 (-) | 423 | WP_041477820.1 | pilin | Machinery gene |
| AYO71_RS25995 (AYO71_25995) | pilB | 5791704..5793404 (+) | 1701 | WP_041477819.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AYO71_RS26000 (AYO71_26000) | pilC | 5793407..5794624 (+) | 1218 | WP_041477818.1 | type II secretion system F family protein | Machinery gene |
| AYO71_RS26005 (AYO71_26005) | pilD | 5794626..5795498 (+) | 873 | WP_041477817.1 | prepilin peptidase | Machinery gene |
| AYO71_RS26010 (AYO71_26010) | coaE | 5795495..5796118 (+) | 624 | WP_041477816.1 | dephospho-CoA kinase | - |
| AYO71_RS26015 (AYO71_26015) | yacG | 5796115..5796315 (+) | 201 | WP_016773149.1 | DNA gyrase inhibitor YacG | - |
| AYO71_RS26020 (AYO71_26020) | - | 5796323..5796538 (-) | 216 | WP_041477815.1 | hypothetical protein | - |
| AYO71_RS26025 (AYO71_26025) | - | 5796604..5797293 (-) | 690 | WP_041477814.1 | energy-coupling factor ABC transporter permease | - |
| AYO71_RS26030 (AYO71_26030) | - | 5797484..5798110 (+) | 627 | WP_007909887.1 | DUF1780 domain-containing protein | - |
| AYO71_RS26035 (AYO71_26035) | - | 5798107..5798634 (+) | 528 | WP_041477813.1 | MOSC domain-containing protein | - |
| AYO71_RS26040 (AYO71_26040) | - | 5798686..5798859 (+) | 174 | WP_007909875.1 | DUF3094 domain-containing protein | - |
| AYO71_RS26045 (AYO71_26045) | - | 5798923..5800221 (+) | 1299 | WP_016773144.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31906.14 Da Isoelectric Point: 7.3655
>NTDB_id=175302 AYO71_RS26005 WP_041477817.1 5794626..5795498(+) (pilD) [Pseudomonas koreensis strain D26]
MPIDELFAVYPLAFVVSALLLGLVVGSFLNVVVWRLPKMLERDWRQQAHDVLGLPTETPVPTYNLMLPHSACPHCGHRIR
PWENIPLLSYLLLRGRCSACSAPISKRYPLTELACGVLSAFIAWHLGFGWPAGLLILLTWGLLAMSLIDCEHQLLPDVLV
LPLLWLGLIVNSFGVFVALPDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AILGVVMLRLRAQETSTPIPFGPFLAIAGWIALLWGGQITDFYWQSVGLK
MPIDELFAVYPLAFVVSALLLGLVVGSFLNVVVWRLPKMLERDWRQQAHDVLGLPTETPVPTYNLMLPHSACPHCGHRIR
PWENIPLLSYLLLRGRCSACSAPISKRYPLTELACGVLSAFIAWHLGFGWPAGLLILLTWGLLAMSLIDCEHQLLPDVLV
LPLLWLGLIVNSFGVFVALPDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AILGVVMLRLRAQETSTPIPFGPFLAIAGWIALLWGGQITDFYWQSVGLK
Nucleotide
Download Length: 873 bp
>NTDB_id=175302 AYO71_RS26005 WP_041477817.1 5794626..5795498(+) (pilD) [Pseudomonas koreensis strain D26]
ATGCCTATCGACGAACTGTTTGCCGTGTATCCGCTGGCCTTTGTGGTCAGCGCGCTGCTGCTCGGGCTGGTGGTCGGCAG
CTTCCTCAACGTAGTGGTCTGGCGCCTGCCGAAGATGCTCGAGCGCGACTGGCGCCAGCAGGCCCATGATGTGCTCGGCC
TGCCCACTGAAACGCCTGTGCCGACCTACAACCTGATGCTGCCGCACTCCGCGTGCCCGCATTGCGGACACCGGATCCGC
CCTTGGGAAAACATTCCGCTGCTCAGTTATCTGCTGCTGCGCGGTCGCTGCTCGGCCTGCTCGGCGCCGATCAGCAAACG
TTACCCGCTGACCGAACTGGCCTGCGGCGTCCTCTCGGCATTCATTGCCTGGCATCTCGGCTTCGGTTGGCCGGCAGGTC
TGCTGATCTTGCTGACATGGGGCTTGCTGGCGATGAGTCTGATCGACTGCGAACATCAACTGCTGCCCGATGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGGCGTGTTCGTGGCGTTGCCCGATGCGTTGTGGGGCGCGGT
CGCGGGTTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGCTCACCGGCAAGGACGGTATCGGCCATGGCGATT
TCAAGCTGTTGGCCTTGCTCGGCGCATGGGGTGGCTGGCAGATTCTGCCGCTGACGATTCTTCTATCTTCCCTGGTGGGA
GCGATTTTGGGCGTTGTCATGCTGCGTCTGCGCGCCCAGGAAACCTCGACGCCGATCCCCTTCGGACCCTTTCTGGCGAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTGAAATGA
ATGCCTATCGACGAACTGTTTGCCGTGTATCCGCTGGCCTTTGTGGTCAGCGCGCTGCTGCTCGGGCTGGTGGTCGGCAG
CTTCCTCAACGTAGTGGTCTGGCGCCTGCCGAAGATGCTCGAGCGCGACTGGCGCCAGCAGGCCCATGATGTGCTCGGCC
TGCCCACTGAAACGCCTGTGCCGACCTACAACCTGATGCTGCCGCACTCCGCGTGCCCGCATTGCGGACACCGGATCCGC
CCTTGGGAAAACATTCCGCTGCTCAGTTATCTGCTGCTGCGCGGTCGCTGCTCGGCCTGCTCGGCGCCGATCAGCAAACG
TTACCCGCTGACCGAACTGGCCTGCGGCGTCCTCTCGGCATTCATTGCCTGGCATCTCGGCTTCGGTTGGCCGGCAGGTC
TGCTGATCTTGCTGACATGGGGCTTGCTGGCGATGAGTCTGATCGACTGCGAACATCAACTGCTGCCCGATGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGGCGTGTTCGTGGCGTTGCCCGATGCGTTGTGGGGCGCGGT
CGCGGGTTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGCTCACCGGCAAGGACGGTATCGGCCATGGCGATT
TCAAGCTGTTGGCCTTGCTCGGCGCATGGGGTGGCTGGCAGATTCTGCCGCTGACGATTCTTCTATCTTCCCTGGTGGGA
GCGATTTTGGGCGTTGTCATGCTGCGTCTGCGCGCCCAGGAAACCTCGACGCCGATCCCCTTCGGACCCTTTCTGGCGAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTGAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
53.873 |
97.931 |
0.528 |
| pilD | Vibrio campbellii strain DS40M4 |
52.982 |
98.276 |
0.521 |
| pilD | Neisseria gonorrhoeae MS11 |
46.69 |
98.966 |
0.462 |
| pilD | Acinetobacter baumannii D1279779 |
46.715 |
94.483 |
0.441 |
| pilD | Acinetobacter nosocomialis M2 |
46.715 |
94.483 |
0.441 |