Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | A3K91_RS01555 | Genome accession | NZ_CP014945 |
| Coordinates | 361443..361883 (+) | Length | 146 a.a. |
| NCBI ID | WP_062843708.1 | Uniprot ID | - |
| Organism | Psychrobacter alimentarius strain PAMC 27889 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 356443..366883
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A3K91_RS01545 (A3K91_0305) | - | 360147..360698 (+) | 552 | WP_062843706.1 | type IV pilin protein | - |
| A3K91_RS01550 (A3K91_0306) | - | 360698..361162 (+) | 465 | WP_062843707.1 | type IV pilin protein | - |
| A3K91_RS01555 (A3K91_0307) | pilA | 361443..361883 (+) | 441 | WP_062843708.1 | pilin | Machinery gene |
| A3K91_RS01560 (A3K91_0308) | - | 361988..363307 (+) | 1320 | WP_228139886.1 | O-antigen ligase family protein | - |
| A3K91_RS01565 (A3K91_0309) | - | 363480..363899 (+) | 420 | WP_167541793.1 | pilin | - |
| A3K91_RS01570 (A3K91_0310) | - | 364051..365319 (+) | 1269 | WP_062843710.1 | sugar transferase | - |
| A3K91_RS01575 (A3K91_0311) | - | 365394..366710 (+) | 1317 | WP_084387217.1 | flippase | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 14797.88 Da Isoelectric Point: 7.7782
>NTDB_id=175264 A3K91_RS01555 WP_062843708.1 361443..361883(+) (pilA) [Psychrobacter alimentarius strain PAMC 27889]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQNYIAKSQASEAFTLIDGAKAEVNTNLEGNSCTNATAAKNTIAGKYGSLV
IAGTAASDASPTASTGCTLTYTFKGTGVSSQLASKVIGATLLNNGTLTKNATTTTVDADILPKSFT
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQNYIAKSQASEAFTLIDGAKAEVNTNLEGNSCTNATAAKNTIAGKYGSLV
IAGTAASDASPTASTGCTLTYTFKGTGVSSQLASKVIGATLLNNGTLTKNATTTTVDADILPKSFT
Nucleotide
Download Length: 441 bp
>NTDB_id=175264 A3K91_RS01555 WP_062843708.1 361443..361883(+) (pilA) [Psychrobacter alimentarius strain PAMC 27889]
ATGAACGCTCAAAAAGGTTTTACCTTAATCGAACTAATGATCGTTGTTGCTATTATCGGTATTTTAGCTGCGATCGCTAT
TCCTGCTTATCAGAATTACATTGCTAAGTCACAAGCATCAGAAGCGTTTACTTTGATAGATGGAGCAAAAGCTGAGGTTA
ATACTAATTTAGAAGGCAATAGCTGTACTAATGCTACTGCTGCTAAAAATACAATTGCTGGTAAGTATGGTAGTTTAGTA
ATTGCTGGTACTGCTGCTAGTGATGCTTCGCCAACCGCATCAACGGGTTGTACACTTACTTATACATTTAAAGGAACTGG
TGTATCAAGTCAGCTAGCGTCTAAAGTAATTGGTGCTACATTACTTAACAACGGTACTTTGACTAAAAATGCTACCACTA
CTACAGTTGATGCTGATATCTTACCTAAATCATTCACTTAA
ATGAACGCTCAAAAAGGTTTTACCTTAATCGAACTAATGATCGTTGTTGCTATTATCGGTATTTTAGCTGCGATCGCTAT
TCCTGCTTATCAGAATTACATTGCTAAGTCACAAGCATCAGAAGCGTTTACTTTGATAGATGGAGCAAAAGCTGAGGTTA
ATACTAATTTAGAAGGCAATAGCTGTACTAATGCTACTGCTGCTAAAAATACAATTGCTGGTAAGTATGGTAGTTTAGTA
ATTGCTGGTACTGCTGCTAGTGATGCTTCGCCAACCGCATCAACGGGTTGTACACTTACTTATACATTTAAAGGAACTGG
TGTATCAAGTCAGCTAGCGTCTAAAGTAATTGGTGCTACATTACTTAACAACGGTACTTTGACTAAAAATGCTACCACTA
CTACAGTTGATGCTGATATCTTACCTAAATCATTCACTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter nosocomialis M2 |
58.389 |
100 |
0.596 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
42.667 |
100 |
0.438 |
| pilA | Vibrio cholerae strain A1552 |
42.667 |
100 |
0.438 |
| pilA | Vibrio cholerae C6706 |
42.667 |
100 |
0.438 |
| pilA | Pseudomonas aeruginosa PAK |
41.333 |
100 |
0.425 |