Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   A3Q34_RS10850 Genome accession   NZ_CP014944
Coordinates   2513934..2515457 (-) Length   507 a.a.
NCBI ID   WP_070375380.1    Uniprot ID   A0A1D8RW17
Organism   Colwellia sp. PAMC 20917     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2508934..2520457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3Q34_RS10825 (A3Q34_10825) proB 2508992..2510089 (+) 1098 WP_070375375.1 glutamate 5-kinase -
  A3Q34_RS10830 (A3Q34_10830) - 2510120..2510515 (-) 396 WP_070375376.1 Fis family transcriptional regulator -
  A3Q34_RS10835 (A3Q34_10835) - 2510801..2511118 (-) 318 WP_070375377.1 pyrimidine/purine nucleoside phosphorylase -
  A3Q34_RS10840 (A3Q34_10840) ilvC 2511248..2512732 (-) 1485 WP_070375378.1 ketol-acid reductoisomerase -
  A3Q34_RS10845 (A3Q34_10845) ilvY 2512932..2513810 (+) 879 WP_070375379.1 HTH-type transcriptional activator IlvY -
  A3Q34_RS10850 (A3Q34_10850) comM 2513934..2515457 (-) 1524 WP_070375380.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  A3Q34_RS10855 (A3Q34_10855) ilvG 2515958..2517622 (+) 1665 WP_070377107.1 acetolactate synthase 2 catalytic subunit -
  A3Q34_RS10860 (A3Q34_10860) ilvM 2517624..2517869 (+) 246 WP_070375381.1 acetolactate synthase 2 small subunit -
  A3Q34_RS10865 (A3Q34_10865) - 2517985..2518911 (+) 927 WP_070375382.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55871.38 Da        Isoelectric Point: 8.0468

>NTDB_id=175256 A3Q34_RS10850 WP_070375380.1 2513934..2515457(-) (comM) [Colwellia sp. PAMC 20917]
MSLACIYSRARVGLESPLVTVEVHLANGLPVFNIVGLPETSVRESKDRVRSAIINCGYQFPAKRITINLAPADLPKEGGR
FDLPIALGILVASKQLPNTDLSQYEFAGELALSGELREIIGEIPMAIACANAKRTLVIPKQNAEQASWVKQANILSIEHL
SQLYPHFLKQRSLPLVSAKAVEYYQVPTSKDIADVIGQPLAKRALEISACGAHNLLFIGPPGTGKTMLASRLPGILPPMS
ESEALEAAAIASISHQKINHKSWLTRPFRAPHHTASSAALVGGGSQPQAGEISLAHNGVLFLDELPEFARKVLDVLREPM
ESAEVTISRAMYKQTFPAKFQLVAAMNPSPTGFYNDNRSTPEQVLRYLNRLSGPFLDRIDIQIEVTRLPKGMWAKDDHNN
ESSAQIQKRVALCRELQLERQGKANAHLGSAETRIFCKLSTDEHEFLELAVEKLGLSTRAHHKILKIARTLADMNSIEDI
QHEHIIEALSYRAMDRLLRHLTDAVSF

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=175256 A3Q34_RS10850 WP_070375380.1 2513934..2515457(-) (comM) [Colwellia sp. PAMC 20917]
ATGAGCTTAGCTTGTATTTATAGCAGAGCCCGGGTTGGGCTTGAGTCTCCCCTTGTCACTGTCGAAGTGCATTTAGCCAA
TGGACTGCCGGTATTTAATATTGTCGGTTTACCAGAAACCTCGGTACGTGAATCAAAAGATCGGGTGCGCAGCGCTATCA
TCAATTGTGGTTATCAGTTCCCAGCAAAGCGAATTACCATAAATCTAGCCCCCGCTGATTTACCTAAAGAAGGAGGTCGC
TTCGACTTACCGATAGCGCTTGGTATTTTGGTTGCGAGTAAGCAACTGCCTAATACAGATTTAAGCCAATATGAGTTTGC
TGGCGAACTTGCGCTTTCTGGTGAATTGCGTGAAATTATTGGTGAAATTCCAATGGCAATTGCTTGCGCTAACGCTAAAA
GAACCTTAGTTATTCCTAAACAAAATGCTGAACAAGCGAGTTGGGTTAAGCAGGCCAATATTTTATCAATAGAACATTTA
AGTCAATTATATCCACACTTTTTAAAGCAACGCTCGCTACCTTTGGTGTCTGCAAAAGCAGTAGAGTATTATCAAGTGCC
TACCAGCAAAGACATTGCTGATGTTATTGGCCAACCACTGGCAAAAAGAGCTCTAGAAATCTCCGCTTGTGGCGCGCACA
ACCTACTTTTTATTGGGCCACCTGGTACGGGCAAAACCATGCTAGCGAGCCGTTTACCTGGAATATTACCACCAATGAGC
GAAAGTGAAGCGTTAGAGGCAGCAGCTATCGCTTCGATTAGCCATCAAAAAATCAATCATAAATCTTGGTTAACTCGCCC
CTTTCGCGCTCCCCATCATACGGCTTCTTCTGCGGCACTGGTTGGTGGTGGCAGCCAACCACAAGCGGGAGAGATTTCAT
TAGCGCATAATGGCGTATTATTTCTGGATGAATTACCTGAATTTGCTCGTAAAGTGCTCGATGTTTTACGTGAGCCCATG
GAATCAGCAGAAGTTACCATTTCTAGAGCAATGTACAAACAAACCTTTCCAGCAAAATTTCAATTAGTAGCTGCGATGAA
TCCTAGCCCAACCGGATTTTACAATGATAACCGCAGCACACCCGAACAAGTGCTACGTTATTTAAATCGCCTATCGGGGC
CTTTTCTTGACCGAATTGATATTCAAATTGAGGTGACCCGTTTACCCAAGGGTATGTGGGCAAAGGATGATCATAACAAT
GAAAGTTCTGCGCAAATACAGAAAAGGGTTGCGCTGTGTAGAGAATTACAATTAGAGCGGCAAGGGAAAGCAAATGCTCA
CTTAGGGAGTGCTGAAACACGGATATTTTGCAAACTGAGTACTGATGAGCATGAGTTTTTAGAGCTTGCCGTTGAAAAAC
TTGGTTTGTCTACCCGCGCCCACCATAAAATATTAAAGATAGCGCGCACCTTGGCAGACATGAATAGTATTGAAGATATT
CAACATGAACATATCATTGAAGCGCTGTCTTATCGCGCAATGGACCGATTACTGAGACACCTAACCGATGCTGTTTCTTT
TTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D8RW17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

57.426

99.606

0.572
  comM Vibrio campbellii strain DS40M4

56.751

100

0.572
  comM Haemophilus influenzae Rd KW20

56.496

100

0.566
  comM Glaesserella parasuis strain SC1401

55.819

100

0.558
  comM Legionella pneumophila str. Paris

47.8

98.619

0.471
  comM Legionella pneumophila strain ERS1305867

47.8

98.619

0.471
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.85

99.803

0.458

Multiple sequence alignment