Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   A3Q33_RS07715 Genome accession   NZ_CP014943
Coordinates   1827849..1829372 (+) Length   507 a.a.
NCBI ID   WP_081179443.1    Uniprot ID   -
Organism   Colwellia sp. PAMC 21821     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1822849..1834372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3Q33_RS07700 (A3Q33_07685) - 1824383..1825306 (-) 924 WP_081179440.1 branched-chain amino acid transaminase -
  A3Q33_RS07705 (A3Q33_07690) ilvM 1825406..1825663 (-) 258 WP_081179441.1 acetolactate synthase 2 small subunit -
  A3Q33_RS07710 (A3Q33_07695) ilvG 1825664..1827328 (-) 1665 WP_081179442.1 acetolactate synthase 2 catalytic subunit -
  A3Q33_RS07715 (A3Q33_07700) comM 1827849..1829372 (+) 1524 WP_081179443.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  A3Q33_RS07720 (A3Q33_07705) ilvY 1829391..1830284 (-) 894 WP_081179444.1 HTH-type transcriptional activator IlvY -
  A3Q33_RS07725 (A3Q33_07710) ilvC 1830458..1831942 (+) 1485 WP_081179445.1 ketol-acid reductoisomerase -
  A3Q33_RS07730 (A3Q33_07715) - 1832056..1832373 (+) 318 WP_081179446.1 pyrimidine/purine nucleoside phosphorylase -
  A3Q33_RS07735 (A3Q33_07720) - 1832762..1834195 (+) 1434 WP_081179447.1 OmpA family protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55583.98 Da        Isoelectric Point: 7.2354

>NTDB_id=175229 A3Q33_RS07715 WP_081179443.1 1827849..1829372(+) (comM) [Colwellia sp. PAMC 21821]
MTLACVFSRARVGLESPLVTVEVHLANGLPAFNIVGLPETSVREAKDRVRSAILNCGYEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAAAAQLPNADLNQYEFAGELALSGELRAIIGEIPMAMACKQSGRTLVIPSENAEQASWVPHVKILSLSHL
NQLFPHFLKQQSLPLVQARALQEYKTESVNDIADVVGQPLAKRALELAASGGHNLLFIGPPGTGKTMLASRLPGILPPMT
EQEALSSAAIQSICHKNINPESWLTRPFRAPHHTASSAALVGGGSHPQPGEISLAHNGVLFLDELPEFERKVLDVLREPM
ESGEVTISRALIKQTFPAQFQLVAAMNPSPTGFYNDKRSTPEQVLRYLNRLSGPFLDRIDIQIEVTRLPRGMWANDEGKG
ESSSTIQKRVSICHQKQILRQGKPNAQLGSAEVRTFCQLSADDNEFLELAIEKLNLSTRAHHKILKISRTLADMEALEHI
EHKHLIEALSYRAMDRILRHLTDAISL

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=175229 A3Q33_RS07715 WP_081179443.1 1827849..1829372(+) (comM) [Colwellia sp. PAMC 21821]
ATGACATTAGCCTGTGTTTTTAGTCGCGCTCGGGTCGGACTCGAATCGCCCTTAGTTACGGTAGAAGTGCATTTAGCCAA
CGGATTGCCTGCATTTAATATTGTCGGCCTGCCTGAAACCTCGGTTCGGGAAGCAAAAGATCGCGTACGCAGTGCTATTC
TCAATTGCGGATATGAATTTCCAGCCAAACGCATCACGGTTAATTTAGCACCTGCTGATTTGCCAAAAGAAGGAGGCCGT
TTCGACCTACCAATTGCCTTAGGCATTCTAGCCGCAGCTGCACAGCTGCCTAACGCGGATTTGAATCAATATGAATTTGC
CGGAGAATTAGCCTTGTCTGGTGAGCTGCGCGCTATTATTGGTGAAATCCCCATGGCAATGGCATGCAAACAAAGTGGCC
GAACACTGGTAATACCGAGTGAAAATGCCGAACAGGCTAGCTGGGTACCGCACGTGAAAATATTAAGCCTGTCACATTTA
AACCAGCTCTTTCCTCATTTTTTAAAACAACAAAGCTTGCCATTAGTTCAAGCAAGAGCCCTACAAGAATATAAAACTGA
GAGTGTGAATGATATTGCCGATGTTGTCGGCCAACCTCTAGCCAAGCGGGCACTAGAACTTGCTGCAAGTGGCGGCCACA
ATTTACTGTTTATTGGGCCTCCAGGTACAGGTAAAACCATGCTTGCCAGTAGATTACCCGGCATTTTACCTCCAATGACC
GAACAAGAAGCCCTTTCAAGTGCCGCTATTCAATCTATCTGTCACAAAAATATCAATCCTGAGTCATGGCTAACTCGACC
ATTTCGCGCCCCACATCACACAGCATCGTCTGCCGCACTTGTTGGCGGCGGCAGTCATCCACAGCCAGGTGAAATTTCTT
TAGCCCATAACGGTGTGCTTTTTCTCGACGAGTTACCCGAATTTGAGCGTAAAGTGCTCGACGTATTACGTGAACCAATG
GAGTCTGGTGAAGTCACCATTTCACGCGCCCTAATCAAACAAACCTTTCCTGCACAGTTTCAATTGGTCGCGGCGATGAA
CCCAAGTCCCACAGGATTTTACAATGACAAGCGCAGTACACCTGAGCAGGTTTTACGTTATCTCAATCGCCTTTCAGGAC
CATTTTTAGATCGAATTGATATTCAAATAGAGGTTACAAGATTACCGCGTGGGATGTGGGCTAACGATGAAGGTAAAGGC
GAGTCAAGCAGTACGATCCAAAAACGGGTCAGTATATGTCACCAAAAACAAATTTTACGCCAAGGCAAGCCTAACGCACA
GCTTGGCAGCGCTGAAGTAAGAACGTTCTGCCAACTCTCAGCTGATGATAACGAATTTTTAGAACTCGCCATTGAAAAAC
TAAACTTATCAACCAGAGCACATCATAAAATACTTAAAATTTCCAGAACACTCGCTGACATGGAAGCCTTAGAGCATATT
GAACACAAGCACTTAATTGAAGCGTTATCGTATCGCGCTATGGATAGAATATTACGCCATTTGACCGACGCTATTTCGCT
GTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-389)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.859

100

0.564
  comM Vibrio campbellii strain DS40M4

56.151

99.408

0.558
  comM Vibrio cholerae strain A1552

55.952

99.408

0.556
  comM Glaesserella parasuis strain SC1401

54.348

99.803

0.542
  comM Legionella pneumophila str. Paris

47.8

98.619

0.471
  comM Legionella pneumophila strain ERS1305867

47.8

98.619

0.471
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.759

100

0.458

Multiple sequence alignment