Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PMA3_RS29345 Genome accession   NZ_CP014870
Coordinates   6596943..6598436 (+) Length   497 a.a.
NCBI ID   WP_064680411.1    Uniprot ID   A0A191Z1Z5
Organism   Pseudomonas silesiensis strain A3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6591943..6603436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PMA3_RS29320 (PMA3_29295) - 6592529..6593866 (-) 1338 WP_064680407.1 ammonium transporter -
  PMA3_RS29325 (PMA3_29300) glnK 6593902..6594240 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  PMA3_RS29330 (PMA3_29305) - 6594655..6594909 (+) 255 WP_064680408.1 accessory factor UbiK family protein -
  PMA3_RS29335 (PMA3_29310) - 6595376..6595903 (+) 528 WP_064680409.1 BRO-N domain-containing protein -
  PMA3_RS29340 (PMA3_29315) - 6595909..6596172 (-) 264 WP_064680410.1 HigA family addiction module antitoxin -
  PMA3_RS32885 - 6596365..6596535 (+) 171 WP_167355125.1 hypothetical protein -
  PMA3_RS29345 (PMA3_29320) comM 6596943..6598436 (+) 1494 WP_064680411.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PMA3_RS29350 (PMA3_29325) - 6598743..6601166 (-) 2424 WP_064680412.1 S8 family peptidase -
  PMA3_RS29355 (PMA3_29330) - 6601189..6602166 (-) 978 WP_064680413.1 AAA family ATPase -
  PMA3_RS29360 (PMA3_29335) - 6602403..6603266 (+) 864 Protein_5932 YifB family Mg chelatase-like AAA ATPase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53075.12 Da        Isoelectric Point: 7.8726

>NTDB_id=174928 PMA3_RS29345 WP_064680411.1 6596943..6598436(+) (comM) [Pseudomonas silesiensis strain A3]
MSLSIVHSRAQIGVDAPAVTVEVHLANGLPSLTMVGLPETAVRESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRAVRGVLPAALAARKAGRTLLVPRANAEEACLASGLKVIAVDHL
LEAVAHFNGHTPIEPYVSDGLMHASKPYPDLNEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
SEALEVAAIQSVASCVPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRAKDRVRFPARFQLVAAMNPCPCGYLGEPTGRCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREPTTLNPTVTP
GEDSASAAVLVAQARERQQKRQGCANAFLDLSGLRRHCKLSTADANWLESACERLALSLRSAHRLLKVARTLADLEQVDD
ITREQLAEALQYRPATQ

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=174928 PMA3_RS29345 WP_064680411.1 6596943..6598436(+) (comM) [Pseudomonas silesiensis strain A3]
ATGTCCCTCTCCATCGTCCACAGCCGCGCCCAGATTGGCGTGGATGCCCCCGCCGTCACCGTGGAAGTCCATCTGGCCAA
CGGTTTGCCATCCCTGACGATGGTCGGTTTACCCGAAACAGCCGTAAGGGAAAGCAAGGACCGCGTGCGCAGCGCGATCA
TTAATTCGGGTCTGCAATTTCCGGCGCGGCGCATCACGTTGAATCTCGCTCCCGCCGATTTGCCAAAGGACGGCGGGCGG
TTCGATCTGGCGATTGCCTTGGGGATCCTGTCGGCCAGTGTCCAGGTGCCGACCTTGACGCTGGACGATGTGGAATGCCT
TGGGGAATTGGCGCTGTCCGGTGCAGTGCGGGCCGTGCGTGGTGTGTTGCCGGCGGCACTGGCTGCGCGCAAGGCGGGAC
GGACATTATTGGTGCCGCGGGCCAATGCCGAAGAGGCATGCCTGGCGTCGGGGTTGAAGGTGATTGCGGTGGATCATCTG
CTGGAAGCCGTTGCGCATTTCAATGGTCATACGCCCATCGAGCCTTACGTTTCGGATGGCTTGATGCATGCCAGCAAACC
CTATCCCGACTTGAACGAAGTGCAGGGCCAGCTCGCGGCCAAGCGTGCGTTGCTGATTGCGGCGGCGGGCGCGCATAACC
TGCTGTTCAGCGGGCCACCGGGAACGGGGAAGACCCTGCTGGCGAGTCGTCTGCCGGGCCTGTTGCCGCCATTGGCAGAA
AGCGAGGCGCTGGAAGTCGCGGCGATTCAATCAGTCGCCAGTTGCGTGCCGTTGAGCCATTGGCCGCAGCGACCGTTTCG
CCAACCCCATCACTCCGCCTCTGGCCCGGCATTGGTGGGCGGTGGCTCGAAACCTCAACCCGGTGAAATCACCCTCGCCC
ATCATGGTGTTTTGTTTCTAGATGAGCTTCCAGAGTTCGACCGCAAGGTGCTGGAGGTCTTAAGGGAGCCATTGGAGTCG
GGCCATATCGTGATTTCCCGAGCGAAGGACCGCGTGCGGTTTCCGGCACGCTTTCAACTGGTGGCGGCGATGAATCCGTG
CCCTTGTGGATATCTTGGTGAACCCACTGGTCGGTGCTCTTGCACGCCTGATATGGTTCAGCGCTACCGTAACAAACTCT
CAGGGCCGTTGCTGGATCGAATCGATTTGCACCTGACGGTTGCCCGGGAGCCCACTACTCTGAATCCAACGGTGACACCC
GGAGAGGACAGCGCCAGCGCGGCGGTGCTGGTCGCGCAGGCGCGTGAACGACAGCAAAAGCGTCAGGGCTGCGCCAATGC
CTTTCTCGACTTGTCGGGACTGCGTCGGCACTGCAAATTATCCACAGCCGACGCAAACTGGCTGGAGTCTGCTTGCGAAC
GTCTAGCCCTGTCGTTGCGCTCGGCACACCGGTTGCTCAAGGTGGCGCGGACGTTGGCCGATCTTGAACAAGTTGATGAC
ATCACCCGAGAGCAGCTGGCCGAGGCGTTGCAGTATAGGCCCGCGACTCAATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A191Z1Z5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.152

99.598

0.549
  comM Vibrio cholerae strain A1552

55.152

99.598

0.549
  comM Haemophilus influenzae Rd KW20

53.908

100

0.541
  comM Glaesserella parasuis strain SC1401

53.2

100

0.535
  comM Legionella pneumophila str. Paris

50.201

100

0.503
  comM Legionella pneumophila strain ERS1305867

50.201

100

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.4

100

0.457

Multiple sequence alignment