Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   A3218_RS13805 Genome accession   NZ_CP014867
Coordinates   3189222..3190715 (-) Length   497 a.a.
NCBI ID   WP_062824252.1    Uniprot ID   A0AAX2E2U0
Organism   Pseudomonas chlororaphis strain 189 isolate 189     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3184222..3195715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3218_RS13785 (A3218_13785) - 3185304..3186020 (+) 717 WP_202908053.1 hypothetical protein -
  A3218_RS32050 - 3185932..3186273 (+) 342 WP_202908054.1 hypothetical protein -
  A3218_RS13790 (A3218_13790) - 3186278..3187204 (-) 927 WP_202908055.1 ABC transporter six-transmembrane domain-containing protein -
  A3218_RS13795 (A3218_13795) - 3187319..3187894 (+) 576 WP_062824250.1 TetR family transcriptional regulator C-terminal domain-containing protein -
  A3218_RS13800 (A3218_13800) - 3188001..3189215 (+) 1215 WP_062824251.1 aldose 1-epimerase family protein -
  A3218_RS13805 (A3218_13805) comM 3189222..3190715 (-) 1494 WP_062824252.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  A3218_RS13810 (A3218_13810) - 3190824..3191573 (-) 750 WP_062824253.1 phosphocholine cytidylyltransferase family protein -
  A3218_RS13815 (A3218_13815) - 3191580..3192212 (-) 633 WP_062824254.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  A3218_RS13820 (A3218_13820) - 3192209..3194611 (-) 2403 WP_062824255.1 PEP/pyruvate-binding domain-containing protein -
  A3218_RS13825 (A3218_13825) - 3194608..3195336 (-) 729 WP_062824256.1 formyltransferase family protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53461.46 Da        Isoelectric Point: 8.0958

>NTDB_id=174881 A3218_RS13805 WP_062824252.1 3189222..3190715(-) (comM) [Pseudomonas chlororaphis strain 189 isolate 189]
MSLAIVHSRAQTGVQAPAVSVEVHLANGLPALTLVGLPEAAVKESKDRVRSAILNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPTLALEEVECLGELALSGAVRPVRGVLPAALAARQAGRTLMVPRANAEEACLASGLKVIAVEHL
LEAVAHFNGHTPIEPYVSDGLLYQNRPYPDLNEVQGQLAAKRALLVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLEE
QEALEVAAIQSVTSHTPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GQIVIARARDRVHFPARFQLVAAMNPCPCGYLGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVARESTALNPKPQA
GDNTAQAAALVARARERQQRRQGCANAFLDLPGLRRHCQLSTADERWLEIACERLTLSLRAAHRLLKVARTLADLEQAEQ
ISREHLAEALQYRPAAS

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=174881 A3218_RS13805 WP_062824252.1 3189222..3190715(-) (comM) [Pseudomonas chlororaphis strain 189 isolate 189]
ATGTCTCTGGCCATTGTCCACAGCCGTGCCCAGACCGGCGTGCAAGCGCCGGCCGTGTCGGTCGAAGTCCATCTGGCCAA
CGGCCTGCCGGCCCTGACCCTGGTGGGCCTGCCCGAAGCGGCGGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATTC
TCAATGCCGGCTTCGATTTTCCAGCCCGGCGCATCACCCTCAACCTCGCCCCGGCCGACCTGCCCAAGGACGGCGGGCGC
TTCGATCTGGCCATTGCCCTGGGCATTCTCGCCGCCAGCGTGCAGGTGCCGACCCTGGCCCTGGAGGAAGTCGAATGCCT
GGGCGAGCTGGCGCTTTCCGGCGCGGTTCGCCCGGTGCGCGGTGTGCTGCCGGCGGCCCTGGCCGCGCGCCAGGCCGGAC
GCACGCTGATGGTGCCGCGCGCGAATGCCGAGGAAGCCTGCCTGGCGTCGGGACTGAAGGTGATTGCCGTCGAGCACTTG
CTGGAAGCCGTTGCGCATTTCAACGGCCATACACCGATCGAACCCTATGTTTCGGACGGTCTGCTCTACCAGAACCGGCC
CTACCCCGACCTGAATGAAGTACAGGGCCAACTGGCCGCCAAACGCGCGCTGCTGGTGGCCGCGGCTGGTGCGCACAACC
TGCTGTTCAGTGGTCCGCCGGGCACCGGCAAGACCTTGCTGGCCAGCCGCCTGCCCGGCCTGTTGCCACCGCTGGAGGAG
CAGGAAGCCCTGGAAGTGGCCGCCATCCAGTCGGTCACCAGCCATACTCCGCTGAGCCATTGGCCGCAGCGACCGTTTCG
CCAGCCGCACCACTCTGCGTCAGGGCCAGCCCTGGTGGGTGGAGGCTCGAAACCACAACCCGGGGAAATCACCCTGGCCC
ACCACGGTGTGCTGTTTCTCGACGAGTTGCCGGAATTCGATCGCAAGGTATTGGAGGTGCTGCGCGAGCCGCTGGAGTCT
GGGCAGATCGTCATCGCCCGGGCTCGCGACCGGGTGCATTTTCCGGCGCGTTTCCAGCTGGTGGCGGCGATGAATCCTTG
CCCCTGTGGATATCTTGGCGAGCCCAGTGGCCGCTGCCGCTGCACGCCGGAGCAGATCCAGCGTTATCGCAACAAACTCT
CCGGGCCGCTGCTCGACCGCATCGACCTGCACCTGACCGTGGCTCGGGAAAGCACCGCCCTCAACCCCAAGCCCCAGGCT
GGGGATAACACCGCGCAAGCCGCGGCCCTGGTGGCCCGCGCCAGGGAGCGGCAACAACGGCGCCAGGGTTGCGCCAATGC
TTTTCTCGACCTGCCGGGCCTGCGCCGGCATTGCCAGTTATCCACAGCCGACGAGCGCTGGCTGGAAATCGCCTGCGAAC
GCCTGACCCTGTCCCTGCGCGCCGCCCACCGCCTGCTCAAGGTCGCCCGTACCCTGGCGGACCTCGAGCAGGCCGAGCAG
ATCAGCCGCGAGCACCTGGCCGAAGCGCTGCAATACCGGCCGGCCGCGAGTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.758

99.598

0.555
  comM Vibrio campbellii strain DS40M4

55.556

99.598

0.553
  comM Glaesserella parasuis strain SC1401

54.4

100

0.547
  comM Haemophilus influenzae Rd KW20

54.4

100

0.547
  comM Legionella pneumophila str. Paris

49.194

99.799

0.491
  comM Legionella pneumophila strain ERS1305867

49.194

99.799

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.429

100

0.471

Multiple sequence alignment