Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   A3224_RS00805 Genome accession   NZ_CP014864
Coordinates   188183..189676 (-) Length   497 a.a.
NCBI ID   WP_067150198.1    Uniprot ID   -
Organism   Microbulbifer thermotolerans strain DAU221     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 184208..194899 188183..189676 within 0


Gene organization within MGE regions


Location: 184208..194899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3224_RS00785 (A3224_00785) rep 184208..186241 (-) 2034 WP_067150187.1 DNA helicase Rep -
  A3224_RS00790 (A3224_00790) - 186384..186623 (+) 240 WP_067150190.1 DUF3565 domain-containing protein -
  A3224_RS00795 (A3224_00795) - 186620..187078 (+) 459 WP_067150192.1 YaiI/YqxD family protein -
  A3224_RS00800 (A3224_00800) - 187403..187972 (+) 570 WP_067150195.1 GNAT family N-acetyltransferase -
  A3224_RS00805 (A3224_00805) comM 188183..189676 (-) 1494 WP_067150198.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  A3224_RS00810 (A3224_00810) - 189704..189955 (-) 252 WP_067150202.1 accessory factor UbiK family protein -
  A3224_RS00815 (A3224_00815) - 190425..191138 (+) 714 WP_067150205.1 TorF family putative porin -
  A3224_RS00820 (A3224_00820) - 191189..191527 (+) 339 WP_067150208.1 P-II family nitrogen regulator -
  A3224_RS00825 (A3224_00825) - 191599..192858 (+) 1260 WP_067150211.1 ammonium transporter -
  A3224_RS00830 (A3224_00830) - 192944..193282 (+) 339 WP_043319767.1 P-II family nitrogen regulator -
  A3224_RS00835 (A3224_00835) - 193685..193909 (+) 225 WP_067150214.1 hypothetical protein -
  A3224_RS00840 (A3224_00840) xerC 194012..194893 (-) 882 WP_067157228.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53205.72 Da        Isoelectric Point: 7.7021

>NTDB_id=174804 A3224_RS00805 WP_067150198.1 188183..189676(-) (comM) [Microbulbifer thermotolerans strain DAU221]
MSLSITYSRAQLGVSAPLVTVETHLANGLPAFHIVGLPEAAVRESRDRVRSALINSHFEFPQRRITVNLAPADLPKEGGR
YDLAIAVGILAASGQIPRDPLDNYEFIGELALTGALREVPGALPAAIACGAAGRRLVLPRESGGEAALAETDVKVAASLL
QVCAELHGREQLSEAQREAEDNAPACADLADVRGQLKARRALEVAAAGGHHLLFYGPPGTGKTMLASRLPGILPPPGGDE
LIEVAAVYSSAGLARPQQRPFRAPHHSASATALAGGGTQPKPGEISLAHRGVLFLDEMPEFPRHALEILREPLETGQVHI
ARARAQVTYPANFQLVAAMNPCPCGYLGEPRCRCTPDQIDRYRNKLSGPLLDRIDMQVEVAAMSASQLQDSPPGECSAAV
RKRVIAARERQLHRQGKINAQLNGSELDRFCALGQSEQALLRHSVERLGLSARSYHRVLRVARTLADLAGEAHIGAGQIA
EALAYRNLDRRQLTAEI

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=174804 A3224_RS00805 WP_067150198.1 188183..189676(-) (comM) [Microbulbifer thermotolerans strain DAU221]
TTGAGCCTCTCGATCACCTACAGCCGCGCGCAACTGGGCGTCTCCGCACCACTGGTCACCGTCGAAACCCATTTGGCCAA
CGGCCTACCGGCCTTTCATATCGTAGGCCTGCCCGAGGCCGCGGTGCGCGAAAGCCGCGACCGGGTCCGCAGCGCACTGA
TCAACAGCCACTTCGAATTTCCCCAGCGGCGCATAACCGTCAACCTGGCCCCCGCGGACCTGCCCAAGGAAGGCGGCCGC
TACGACCTCGCCATCGCCGTGGGCATTCTCGCCGCATCCGGCCAAATCCCCCGCGATCCCCTGGATAACTATGAGTTCAT
CGGCGAACTGGCACTCACCGGGGCACTGCGGGAAGTCCCCGGCGCCCTGCCTGCAGCCATCGCTTGCGGTGCCGCCGGGC
GCCGGCTGGTATTGCCGCGGGAGTCCGGCGGCGAGGCGGCGCTGGCGGAAACAGATGTAAAGGTCGCCGCCTCCCTGCTA
CAGGTCTGTGCCGAATTGCACGGGCGCGAACAGCTCTCGGAAGCGCAGCGCGAGGCGGAAGACAATGCACCAGCCTGTGC
TGATCTCGCCGATGTGCGCGGCCAGCTCAAGGCGCGGCGCGCCCTGGAAGTGGCCGCGGCCGGCGGCCACCATTTGCTTT
TTTACGGTCCACCCGGCACCGGCAAAACCATGCTCGCCAGCCGCCTGCCGGGCATACTGCCGCCGCCCGGCGGTGACGAG
CTGATCGAAGTGGCCGCCGTCTACTCCAGCGCCGGTCTGGCGCGGCCGCAACAGCGCCCTTTCCGCGCGCCCCATCACAG
CGCCTCGGCAACCGCTCTGGCCGGGGGCGGCACTCAGCCGAAACCGGGGGAAATTTCCCTGGCCCATCGCGGGGTATTGT
TTCTGGACGAAATGCCGGAGTTCCCCCGCCACGCGCTGGAAATATTGCGCGAGCCGCTGGAAACCGGGCAGGTGCATATC
GCCCGCGCCCGTGCCCAGGTCACCTATCCCGCCAACTTTCAGCTGGTGGCCGCCATGAACCCCTGTCCCTGCGGCTACCT
GGGCGAGCCCCGCTGCCGCTGTACCCCGGACCAGATAGACCGCTACCGCAACAAGCTCTCCGGCCCTCTGCTCGACCGCA
TCGATATGCAGGTGGAAGTGGCGGCGATGTCGGCCAGTCAGCTGCAGGACAGTCCGCCCGGCGAATGCTCGGCGGCGGTG
CGCAAACGGGTGATTGCCGCCCGGGAGCGGCAGCTGCACAGACAGGGAAAAATCAACGCGCAGCTCAACGGGTCCGAGCT
GGACCGCTTCTGTGCACTGGGACAAAGCGAGCAAGCACTGCTGCGGCACTCGGTGGAAAGACTGGGGCTGTCCGCGCGCA
GTTACCACCGGGTATTAAGAGTCGCGCGCACCCTGGCAGATCTCGCTGGAGAGGCGCACATCGGCGCAGGCCAAATTGCC
GAAGCGCTGGCCTACCGAAATCTAGATCGGCGACAACTCACCGCAGAAATCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-387)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(395-486)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.446

100

0.563
  comM Vibrio campbellii strain DS40M4

54.257

100

0.551
  comM Haemophilus influenzae Rd KW20

53.493

100

0.539
  comM Glaesserella parasuis strain SC1401

53.493

100

0.539
  comM Legionella pneumophila str. Paris

49.299

100

0.495
  comM Legionella pneumophila strain ERS1305867

49.299

100

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.553

100

0.461

Multiple sequence alignment