Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ATSB10_RS13120 Genome accession   NZ_CP014841
Coordinates   2890392..2891897 (-) Length   501 a.a.
NCBI ID   WP_083966215.1    Uniprot ID   -
Organism   Dyella thiooxydans strain ATSB10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2885392..2896897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATSB10_RS13105 (ATSB10_26920) aceB 2885400..2886992 (+) 1593 WP_063673224.1 malate synthase A -
  ATSB10_RS13110 (ATSB10_26930) aceA 2887033..2888322 (+) 1290 WP_063673225.1 isocitrate lyase -
  ATSB10_RS13115 (ATSB10_26940) - 2888370..2890166 (-) 1797 WP_063673226.1 sodium:proton antiporter -
  ATSB10_RS13120 (ATSB10_26950) comM 2890392..2891897 (-) 1506 WP_083966215.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ATSB10_RS19005 - 2892040..2892297 (-) 258 WP_083966216.1 accessory factor UbiK family protein -
  ATSB10_RS13130 (ATSB10_26970) glnK 2892487..2892825 (+) 339 WP_063673228.1 P-II family nitrogen regulator -
  ATSB10_RS13135 (ATSB10_26980) - 2892833..2893369 (-) 537 WP_063673229.1 hypothetical protein -
  ATSB10_RS13140 (ATSB10_26990) gpmA 2893475..2894218 (-) 744 WP_063673230.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  ATSB10_RS13145 (ATSB10_27000) - 2894395..2895045 (+) 651 WP_063673231.1 hypothetical protein -
  ATSB10_RS13150 (ATSB10_27010) hemF 2895121..2896023 (-) 903 WP_063673232.1 oxygen-dependent coproporphyrinogen oxidase -
  ATSB10_RS13155 (ATSB10_27020) - 2896076..2896777 (-) 702 WP_063673233.1 YdcF family protein -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 53798.40 Da        Isoelectric Point: 7.1413

>NTDB_id=174620 ATSB10_RS13120 WP_083966215.1 2890392..2891897(-) (comM) [Dyella thiooxydans strain ATSB10]
MSLAVTLSRAQEGVAAPQVMVEVHLSGGLPGTNIVGLPEAAVREARDRVRVAIQNTAFSYPDRKVTVNLAPAELPKDGGR
FDLAIALGILAAGGQVPRDKLDDCEFLGELALSGAIRGVSGVVPALLRARARGRRMVVPRANAAEAALVPDVDVLVADSL
AEVCGWLHDASSLAPPQAEMTDDTGQPGRGPDMSDVRGQLQARRALEIAAVGGHHLLLVGPPGTGKTMLAERLPGILPPL
TEVEALETCAVLSVTGQPVDPSQWRRRPFRAPHHTASAVALVGGGSYPRPGEISLAHHGVLFLDELPEFNRHVLDVLREP
LESGQIMISRAARQSSFPAQFQLVAAMNPCPCGYAGDPRQRCHCTPDQIQRYRGKISGPLLDRIDLSVEVPRVPLAELGA
PPGEHDEDSATVRQRVIRARDHALQRAGRPNADISTRELERDCALGSAERRWFESALERLGLSARAYHRTLRVARTIADL
DGGAGLLDRAHLAEALQYRRF

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=174620 ATSB10_RS13120 WP_083966215.1 2890392..2891897(-) (comM) [Dyella thiooxydans strain ATSB10]
ATGAGCCTGGCCGTCACCCTCAGCCGTGCCCAGGAAGGGGTGGCTGCGCCGCAGGTGATGGTCGAGGTGCATCTCTCCGG
TGGCCTGCCGGGCACCAATATCGTTGGCCTCCCCGAAGCGGCCGTGCGAGAGGCGCGGGACCGTGTGCGGGTAGCCATCC
AGAACACCGCATTCAGCTATCCGGACCGCAAGGTCACCGTCAACCTGGCGCCTGCCGAGCTGCCCAAGGACGGAGGCCGT
TTCGACCTGGCGATCGCACTGGGCATTCTCGCCGCCGGCGGGCAGGTGCCGCGCGACAAGCTGGACGACTGCGAATTCCT
CGGGGAGTTGGCGCTTTCGGGAGCGATTCGCGGGGTCTCGGGCGTGGTGCCCGCTCTGCTGCGGGCCCGCGCTCGCGGCC
GGCGCATGGTGGTTCCCAGGGCCAATGCCGCCGAGGCAGCGCTTGTGCCGGATGTCGATGTGCTGGTGGCCGACAGCCTG
GCCGAAGTCTGCGGCTGGCTGCATGACGCTTCGTCGCTGGCCCCGCCGCAGGCGGAGATGACCGACGATACCGGCCAGCC
CGGCCGCGGCCCGGACATGAGTGACGTGCGCGGCCAGTTGCAGGCGCGCCGGGCCCTGGAGATCGCCGCCGTCGGCGGTC
ACCACCTGTTGCTGGTCGGGCCGCCCGGGACCGGCAAGACCATGCTGGCCGAGCGGCTGCCGGGCATCCTGCCGCCGCTG
ACCGAGGTCGAGGCGCTGGAAACCTGCGCCGTGCTCTCGGTAACCGGCCAGCCGGTGGATCCGTCGCAGTGGCGACGGCG
GCCGTTCCGTGCGCCGCACCACACGGCCTCGGCGGTGGCACTGGTCGGCGGCGGCTCCTACCCGAGACCGGGCGAGATCT
CGCTGGCCCACCATGGCGTCCTGTTTCTCGACGAGTTGCCGGAATTCAACCGGCACGTGCTCGATGTCCTGCGTGAGCCA
CTCGAGTCGGGCCAGATCATGATTTCCCGCGCTGCCCGGCAATCGAGCTTTCCGGCCCAGTTCCAGCTCGTGGCAGCGAT
GAATCCCTGCCCGTGCGGGTATGCGGGTGATCCGCGCCAGCGCTGCCACTGCACGCCGGACCAGATCCAGCGCTACCGCG
GGAAAATCTCCGGGCCGCTGCTGGACCGCATCGATCTCAGCGTGGAGGTTCCGCGCGTGCCGCTGGCCGAATTGGGTGCA
CCGCCGGGCGAACACGACGAGGACTCGGCGACCGTCCGCCAGCGGGTGATTCGCGCCCGCGATCATGCCCTTCAGCGGGC
CGGGCGTCCCAATGCCGATATCAGCACCCGCGAGCTCGAGCGCGATTGCGCGCTCGGGTCGGCCGAGCGGCGTTGGTTCG
AGTCGGCGCTGGAGCGCCTGGGACTCTCGGCCCGGGCCTATCACCGCACCCTGCGGGTGGCGCGCACCATCGCGGACCTC
GATGGCGGTGCCGGACTGCTGGACCGTGCCCACCTGGCCGAAGCCCTGCAATACCGGCGTTTCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.711

99.601

0.555
  comM Vibrio campbellii strain DS40M4

54.709

99.601

0.545
  comM Haemophilus influenzae Rd KW20

52.988

100

0.531
  comM Glaesserella parasuis strain SC1401

52.495

100

0.525
  comM Legionella pneumophila str. Paris

51.594

100

0.517
  comM Legionella pneumophila strain ERS1305867

51.594

100

0.517
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.181

99.401

0.449

Multiple sequence alignment