Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PATSB16_RS16565 Genome accession   NZ_CP014839
Coordinates   3612737..3614251 (+) Length   504 a.a.
NCBI ID   WP_047215161.1    Uniprot ID   A0A0G3ETA8
Organism   Pandoraea thiooxydans strain ATSB16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3607737..3619251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PATSB16_RS16540 (PATSB16_35290) gshA 3607835..3609124 (-) 1290 WP_047215156.1 glutamate--cysteine ligase -
  PATSB16_RS16545 (PATSB16_35300) - 3609322..3610716 (-) 1395 WP_047215157.1 ammonium transporter -
  PATSB16_RS16550 (PATSB16_35310) - 3610744..3611082 (-) 339 WP_047215158.1 P-II family nitrogen regulator -
  PATSB16_RS16555 (PATSB16_35330) - 3611198..3611998 (-) 801 WP_047215159.1 TorF family putative porin -
  PATSB16_RS16560 (PATSB16_35340) - 3612339..3612584 (+) 246 WP_047215160.1 accessory factor UbiK family protein -
  PATSB16_RS16565 (PATSB16_35350) comM 3612737..3614251 (+) 1515 WP_047215161.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PATSB16_RS16570 (PATSB16_35360) - 3614325..3614789 (-) 465 WP_052892725.1 hypothetical protein -
  PATSB16_RS16575 (PATSB16_35380) - 3615092..3615616 (+) 525 WP_047215162.1 TlpA family protein disulfide reductase -
  PATSB16_RS16580 (PATSB16_35390) - 3615661..3616551 (-) 891 WP_052892726.1 N-formylglutamate amidohydrolase -
  PATSB16_RS16585 (PATSB16_35400) - 3616786..3617973 (-) 1188 WP_072628675.1 glycosyltransferase family 9 protein -
  PATSB16_RS16590 (PATSB16_35410) lipA 3618011..3619018 (-) 1008 WP_047215164.1 lipoyl synthase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 53853.62 Da        Isoelectric Point: 8.0142

>NTDB_id=174599 PATSB16_RS16565 WP_047215161.1 3612737..3614251(+) (comM) [Pandoraea thiooxydans strain ATSB16]
MSLAVVKSRALAGMRAPEVTVEVHLANGLPSLTIVGLPDTEVKESRDRVRSAIQNCRFEFPARRITVNLAPADLPKESGR
FDLPIALGILAASGQIPATALADHEFAGELSLSGELRPIRGALAMAHALAHAQAPTAFVLPAANADEAALVGRATVYPAR
SLLDVCAHLMARDDGDRLVAHRRAAPACVCDYPDMSEVKGQAPVKRALEVAAAGGHHALLIGPPGTGKSMLANRFPALLP
PLSEAQSLDVATVLSLSTQGFDPARWGLRPFRAPHHTASAVALVGGGGTPRPGEISLAHHGVLFLDELPEFDRKVLEVLR
EPLECGRITISRASRQAEFPAEFQLIAAMNPCPCGYLGHASGRCRCTPEAVARYQGRLSGPLLDRIDVQIEVPALSADDL
ANQPACESSDDIARRVGAARARQISRRDRPNHALQGRDIDRFCQPTSAAAGMLRHAANRLHWSARAYHRALKIARTIADL
DDVDTIDSAHIAEAIQYRRAVSAK

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=174599 PATSB16_RS16565 WP_047215161.1 3612737..3614251(+) (comM) [Pandoraea thiooxydans strain ATSB16]
ATGTCGCTCGCGGTCGTCAAAAGCCGCGCGCTAGCTGGAATGCGCGCGCCCGAGGTGACGGTCGAAGTTCATCTCGCCAA
CGGTCTGCCGTCGTTGACGATCGTCGGATTGCCCGACACCGAGGTCAAGGAAAGCCGCGACCGGGTTCGCTCCGCGATCC
AGAACTGCCGCTTCGAATTTCCCGCACGCCGCATCACCGTCAATCTGGCGCCGGCAGATTTACCCAAGGAGTCGGGCCGC
TTCGACCTGCCCATTGCGCTGGGCATCCTGGCGGCCAGCGGGCAAATCCCCGCCACGGCGCTCGCCGATCACGAATTCGC
GGGCGAACTGTCTCTGTCCGGCGAGTTGCGGCCAATACGCGGGGCCCTGGCCATGGCACACGCGCTCGCGCATGCCCAAG
CACCGACCGCGTTCGTCCTGCCGGCAGCCAATGCGGACGAAGCGGCACTGGTCGGCCGCGCAACCGTCTATCCCGCCAGA
TCGCTGCTCGACGTTTGCGCGCACCTGATGGCCCGGGACGACGGCGACCGACTCGTCGCTCACCGACGAGCGGCTCCCGC
ATGCGTGTGCGACTATCCCGACATGAGCGAGGTCAAAGGGCAGGCGCCAGTCAAGCGCGCCCTGGAAGTTGCCGCCGCCG
GCGGGCATCACGCGTTGTTGATCGGCCCGCCCGGCACCGGGAAATCCATGCTGGCAAACCGCTTTCCCGCCCTGCTGCCG
CCGCTGAGCGAAGCGCAGTCGCTCGACGTCGCCACCGTGCTCAGCCTCAGCACGCAGGGCTTCGACCCGGCGAGATGGGG
CCTGCGGCCATTCCGCGCGCCCCATCACACCGCATCGGCAGTGGCGCTGGTCGGCGGCGGCGGCACCCCCAGGCCCGGCG
AAATCAGCCTGGCCCACCACGGTGTCCTGTTTCTCGACGAATTACCGGAATTCGACCGCAAAGTTCTGGAGGTCTTGCGT
GAACCGCTGGAGTGCGGCCGTATAACGATCTCGCGCGCCTCCCGGCAGGCGGAATTTCCCGCCGAATTTCAACTGATCGC
GGCCATGAACCCCTGCCCCTGCGGCTATCTCGGCCATGCGTCAGGGCGCTGTCGCTGCACTCCCGAGGCTGTTGCCCGTT
ACCAGGGCCGCTTGTCGGGGCCGCTGCTCGACCGGATCGACGTGCAAATCGAGGTGCCCGCCCTGAGCGCCGACGATCTG
GCCAACCAGCCCGCGTGCGAATCGAGCGACGATATCGCACGCCGGGTCGGTGCGGCACGCGCCCGGCAAATCTCCCGCCG
AGACAGGCCCAATCACGCGCTGCAAGGGCGGGATATCGACCGGTTCTGCCAACCGACGTCAGCGGCCGCCGGCATGTTGC
GTCATGCCGCAAATCGGCTGCATTGGTCGGCTCGCGCCTATCACCGGGCGCTCAAAATCGCACGCACGATCGCCGATCTG
GATGACGTCGACACGATCGACAGCGCTCATATCGCAGAAGCGATTCAATATCGGCGCGCCGTCTCGGCCAAATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-398)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-498)

Subunit ChlI of Mg-chelatase (ChlI)

(21-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G3ETA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.092

99.405

0.538
  comM Vibrio campbellii strain DS40M4

51.874

100

0.522
  comM Legionella pneumophila str. Paris

51.389

100

0.514
  comM Legionella pneumophila strain ERS1305867

51.389

100

0.514
  comM Glaesserella parasuis strain SC1401

50

100

0.5
  comM Haemophilus influenzae Rd KW20

48.915

100

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.472

100

0.458

Multiple sequence alignment