Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   A2G56_RS06850 Genome accession   NZ_CP014835
Coordinates   1502494..1503402 (-) Length   302 a.a.
NCBI ID   WP_062710704.1    Uniprot ID   -
Organism   Streptococcus halotolerans strain HTS9     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1497494..1508402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2G56_RS06825 - 1498100..1498927 (-) 828 WP_062710695.1 ABC transporter ATP-binding protein -
  A2G56_RS06830 - 1498920..1499276 (-) 357 WP_062710696.1 GntR family transcriptional regulator -
  A2G56_RS06835 - 1499562..1501343 (-) 1782 WP_062710698.1 acyltransferase family protein -
  A2G56_RS06840 - 1501340..1501741 (-) 402 WP_062710700.1 hypothetical protein -
  A2G56_RS06845 - 1501758..1502180 (-) 423 WP_062710702.1 low molecular weight protein-tyrosine-phosphatase -
  A2G56_RS06850 comR 1502494..1503402 (-) 909 WP_062710704.1 helix-turn-helix domain-containing protein Regulator
  A2G56_RS06855 purB 1503508..1504800 (-) 1293 WP_062712515.1 adenylosuccinate lyase -
  A2G56_RS10475 - 1505638..1505808 (-) 171 Protein_1349 5-(carboxyamino)imidazole ribonucleotide synthase -
  A2G56_RS06860 - 1506001..1507284 (-) 1284 WP_082785123.1 LysM peptidoglycan-binding domain-containing protein -

Sequence

Protein


Download         Length: 302 a.a.        Molecular weight: 35665.56 Da        Isoelectric Point: 4.2847

>NTDB_id=174491 A2G56_RS06850 WP_062710704.1 1502494..1503402(-) (comR) [Streptococcus halotolerans strain HTS9]
MIINFGKRLKELRNERLLTREEFCMDESELSVRQLARIELGQSLPNIRTAMFIADRLGVSLQFLTNGEKLELPKEYLELK
HHILRVPTYSDTARIAIKEKYFDTIYENYYDELPEVEKLVIDTLQATQDSLITENFNFGISILGDYFEQTKVKERYDEND
LVLINLYLTYLDLEGFEGQYSDPLFNSRLFEKLDSQSKEFTVDELIVLTQVLITMYAISLKDDQLVALDDVLNLIDYTMD
KTKDYSRLPIQKVLEWKYRLYVEGNQEDAQSSYDKAMLFAKMTDDSYLEEQLAIEWNKDMQR

Nucleotide


Download         Length: 909 bp        

>NTDB_id=174491 A2G56_RS06850 WP_062710704.1 1502494..1503402(-) (comR) [Streptococcus halotolerans strain HTS9]
ATGATTATAAATTTTGGGAAACGATTAAAAGAATTAAGGAACGAAAGACTGTTAACTCGTGAAGAATTTTGTATGGATGA
GTCAGAACTATCGGTTCGACAATTAGCTCGAATTGAACTTGGACAGTCACTGCCAAATATTAGAACAGCGATGTTTATTG
CTGACCGATTAGGTGTTTCACTTCAATTTCTAACGAATGGTGAAAAATTAGAATTACCCAAAGAGTACTTAGAGTTAAAA
CATCATATCTTACGAGTACCAACTTATTCTGACACCGCTCGAATAGCAATTAAAGAAAAATATTTTGATACCATTTATGA
AAATTATTACGATGAACTTCCGGAAGTGGAAAAGTTGGTCATTGATACTTTACAAGCAACACAAGATTCGTTAATAACGG
AGAATTTCAACTTTGGAATCAGTATTTTGGGAGATTATTTTGAACAAACTAAGGTAAAAGAAAGATATGATGAGAATGAT
TTAGTTCTAATAAATTTATATTTAACCTATCTTGATTTAGAAGGTTTTGAAGGTCAGTATTCGGATCCGTTATTTAATAG
TCGACTATTTGAAAAACTTGATAGTCAGTCTAAAGAATTTACAGTAGATGAATTGATTGTATTGACACAGGTCTTGATTA
CAATGTATGCTATCTCTCTGAAAGATGATCAATTGGTAGCTTTAGATGATGTATTAAACTTAATTGATTACACAATGGAT
AAAACAAAAGATTATAGCAGGTTGCCAATTCAGAAAGTTTTAGAATGGAAGTACCGATTATACGTTGAAGGAAACCAAGA
AGATGCGCAGAGTAGTTATGATAAAGCGATGCTTTTTGCTAAAATGACCGATGACAGTTATTTAGAAGAACAGTTAGCAA
TTGAGTGGAACAAAGATATGCAGAGATGA

Domains

Predicted by InterproScan.

ComR tetratricopeptide (ComR_TPR)

(73-296)

Helix-turn-helix (HTH_3)

(9-64)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus pyogenes MGAS8232

49.502

99.669

0.493
  comR Streptococcus mutans UA159

43.854

99.669

0.437
  comR Streptococcus infantarius subsp. infantarius ATCC BAA-102

43.448

96.026

0.417
  comR Streptococcus pyogenes MGAS315

39.867

99.669

0.397
  comR Streptococcus suis P1/7

36.455

99.007

0.361
  comR Streptococcus suis 05ZYH33

36.455

99.007

0.361

Multiple sequence alignment