Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   BSR30_RS08430 Genome accession   NZ_CP018205
Coordinates   1654634..1655236 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain HG001 isolate RN1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1649634..1660236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR30_RS08410 yajC 1651130..1651390 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  BSR30_RS08415 tgt 1651409..1652548 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  BSR30_RS08420 queA 1652571..1653596 (-) 1026 WP_001019172.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  BSR30_RS08425 ruvB 1653598..1654602 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  BSR30_RS08430 ruvA 1654634..1655236 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  BSR30_RS08435 - 1655250..1655705 (-) 456 WP_000368902.1 ACT domain-containing protein -
  BSR30_RS08440 obgE 1655718..1657010 (-) 1293 WP_000496100.1 GTPase ObgE -
  BSR30_RS08445 rpmA 1657365..1657649 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  BSR30_RS08450 - 1657661..1657981 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  BSR30_RS08455 rplU 1657987..1658295 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  BSR30_RS08460 mreD 1658462..1658992 (-) 531 WP_001259925.1 rod shape-determining protein MreD -
  BSR30_RS08465 mreC 1658992..1659834 (-) 843 WP_000911041.1 rod shape-determining protein MreC -
  BSR30_RS08470 - 1660034..1660153 (-) 120 WP_000840602.1 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=174013 BSR30_RS08430 WP_000271547.1 1654634..1655236(-) (ruvA) [Staphylococcus aureus strain HG001 isolate RN1]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=174013 BSR30_RS08430 WP_000271547.1 1654634..1655236(-) (ruvA) [Staphylococcus aureus strain HG001 isolate RN1]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425

Multiple sequence alignment