Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   A0T30_RS00880 Genome accession   NZ_CP014784
Coordinates   182733..184229 (+) Length   498 a.a.
NCBI ID   WP_061902671.1    Uniprot ID   -
Organism   Aquipseudomonas alcaligenes strain NEB 585     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 177733..189229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0T30_RS00850 (A0T30_00850) sutA 178018..178347 (-) 330 WP_061902668.1 transcriptional regulator SutA -
  A0T30_RS00855 (A0T30_00855) - 178436..178861 (-) 426 WP_061902669.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  A0T30_RS00860 (A0T30_00860) - 178989..180239 (-) 1251 WP_061902670.1 ammonium transporter -
  A0T30_RS00865 (A0T30_00865) - 180335..181651 (-) 1317 WP_021700070.1 ammonium transporter -
  A0T30_RS00870 (A0T30_00870) glnK 181687..182025 (-) 339 WP_021700071.1 P-II family nitrogen regulator -
  A0T30_RS00875 (A0T30_00875) - 182440..182700 (+) 261 WP_021700072.1 accessory factor UbiK family protein -
  A0T30_RS00880 (A0T30_00880) comM 182733..184229 (+) 1497 WP_061902671.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  A0T30_RS00885 (A0T30_00885) - 184343..186310 (+) 1968 WP_061902672.1 choline BCCT transporter BetT -
  A0T30_RS00890 (A0T30_00890) - 186358..187158 (-) 801 WP_061902673.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  A0T30_RS00895 (A0T30_00895) - 187482..188411 (-) 930 WP_061902674.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 52829.69 Da        Isoelectric Point: 8.1517

>NTDB_id=174013 A0T30_RS00880 WP_061902671.1 182733..184229(+) (comM) [Aquipseudomonas alcaligenes strain NEB 585]
MSLAIVHSRAQVGVEAPPVTVEAHLANGLPALTLVGLPETAVKESKDRVRSAIQNAGFDFPPRRITLNLAPADLPKDGGR
FDLAIALGVLAASEQVPAASLAELECLGELALSGELRPVQGVLPAALAARAAGRTLVVPRANAEEASLASGLKVLAVDHL
LQIAAHLNGHTPLSPYQANGLLRQEAAYPDLAEVQGQLAAKRALLIAASGGHNLLLSGPPGTGKTLLASRLPGLLPPLSE
EEALEVAAIHSVASHAPLTAWPRRPFRQPHHSASGPALVGGGSRPQPGEISLAHHGILFLDELPEFDRKVLEVLREPLES
GHIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPGGRCRCTPEQIQRYRAKLSGPLLDRIDLHLTVARESTSLLASSQA
GESSAQVAARVSQARQRQLARQGCANAFLDLPGLQQHCRLPETDRLWLEQACERLNLSLRAAHRLLKVARTLADLEGASE
IGRAHLAEALQYRPSSGI

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=174013 A0T30_RS00880 WP_061902671.1 182733..184229(+) (comM) [Aquipseudomonas alcaligenes strain NEB 585]
ATGTCCCTCGCCATCGTCCACAGCCGTGCCCAGGTCGGCGTCGAAGCGCCGCCCGTCACCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCGGCCCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTCAAGGAAAGCAAGGATCGCGTGCGCAGTGCGATCC
AGAACGCCGGTTTCGATTTCCCGCCACGGCGCATCACCCTCAACCTGGCGCCTGCCGACCTGCCCAAGGACGGCGGGCGT
TTCGACCTGGCCATCGCCCTCGGCGTGCTGGCCGCCAGCGAGCAGGTGCCGGCGGCCAGCCTGGCCGAACTGGAATGCCT
GGGTGAGCTGGCGCTGTCCGGCGAGCTGCGCCCGGTACAGGGCGTGCTGCCCGCCGCCCTGGCTGCCCGCGCCGCCGGAC
GCACCCTGGTGGTGCCGCGGGCCAATGCCGAGGAAGCCAGCCTGGCCTCGGGCCTCAAGGTGCTGGCGGTCGACCACCTG
CTGCAGATCGCCGCCCACCTCAACGGCCATACGCCCCTCTCGCCCTATCAGGCCAATGGCCTGCTGCGCCAGGAAGCGGC
TTACCCCGACCTGGCCGAAGTGCAGGGCCAGCTGGCGGCCAAGCGCGCCCTGCTGATCGCCGCCAGCGGCGGTCACAACC
TGCTGCTCAGCGGGCCTCCGGGCACCGGCAAGACCCTGCTGGCCAGCCGCCTGCCCGGTCTGCTGCCGCCGCTGTCCGAG
GAGGAGGCGCTGGAAGTGGCGGCCATCCATTCGGTGGCCAGCCATGCGCCATTAACGGCCTGGCCGCGCCGACCGTTCCG
CCAGCCGCATCACAGTGCCTCCGGGCCAGCGCTGGTCGGAGGCGGCAGTCGCCCGCAACCCGGCGAGATCAGCCTGGCCC
ATCACGGCATCCTGTTCCTCGACGAGCTGCCCGAGTTCGACCGCAAGGTCCTCGAGGTCCTTCGCGAGCCTCTGGAGTCG
GGCCATATCGTGATCGCCCGGGCCCGCGACAAGGTGCGCTTCCCCGCGCGCTTTCAGCTGGTGGCGGCGATGAACCCCTG
CCCCTGCGGCTACCTGGGCGACCCCGGCGGCCGCTGCCGCTGCACCCCGGAACAGATCCAGCGCTACCGCGCCAAACTGT
CCGGGCCGCTGCTCGACCGCATCGACCTGCACCTCACCGTGGCGCGTGAAAGCACCAGCCTGCTGGCCAGCAGCCAGGCT
GGCGAGAGCAGCGCCCAGGTCGCCGCCCGTGTCAGCCAGGCACGCCAACGCCAGCTCGCGCGCCAGGGCTGCGCCAATGC
CTTCCTCGATCTGCCGGGCCTGCAGCAGCATTGTCGTCTGCCCGAAACCGACCGGCTGTGGCTGGAGCAGGCCTGCGAAC
GCCTCAACCTGTCGCTACGGGCAGCCCATCGCCTGCTCAAGGTCGCGCGCACCCTGGCCGATCTGGAAGGCGCCAGCGAG
ATCGGCCGCGCGCACCTGGCCGAGGCCCTGCAGTACCGTCCCAGCAGCGGCATCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

57.778

99.398

0.574
  comM Vibrio cholerae strain A1552

57.374

99.398

0.57
  comM Glaesserella parasuis strain SC1401

54.98

100

0.554
  comM Haemophilus influenzae Rd KW20

54.691

100

0.55
  comM Legionella pneumophila str. Paris

52.008

100

0.52
  comM Legionella pneumophila strain ERS1305867

52.008

100

0.52
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.813

100

0.472

Multiple sequence alignment