Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   sps_RS15910 Genome accession   NZ_CP014782
Coordinates   3712198..3713721 (+) Length   507 a.a.
NCBI ID   WP_077753420.1    Uniprot ID   A0A1S6HS75
Organism   Shewanella psychrophila strain WP2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3707198..3718721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  sps_RS15890 (Sps_03219) - 3708127..3708729 (-) 603 WP_077753416.1 TetR/AcrR family transcriptional regulator -
  sps_RS15895 (Sps_03220) - 3709421..3709771 (+) 351 WP_077753417.1 phasin family protein -
  sps_RS15900 (Sps_03221) phaC 3709826..3711601 (+) 1776 WP_077753418.1 class I poly(R)-hydroxyalkanoic acid synthase -
  sps_RS15905 (Sps_03222) - 3711591..3711995 (+) 405 WP_077753419.1 MaoC family dehydratase -
  sps_RS15910 (Sps_03223) comM 3712198..3713721 (+) 1524 WP_077753420.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  sps_RS15915 (Sps_03224) - 3713858..3714763 (+) 906 WP_077753421.1 acyltransferase -
  sps_RS15920 (Sps_03225) - 3714771..3715697 (+) 927 WP_077753422.1 acyltransferase -
  sps_RS15925 (Sps_03226) - 3715893..3716303 (+) 411 WP_077753423.1 hypothetical protein -
  sps_RS15930 (Sps_03227) - 3716385..3717473 (-) 1089 WP_077753424.1 branched-chain amino acid aminotransferase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55299.52 Da        Isoelectric Point: 7.8282

>NTDB_id=173922 sps_RS15910 WP_077753420.1 3712198..3713721(+) (comM) [Shewanella psychrophila strain WP2]
MAIACVATRANKGVDAPPVTVEVHLSNGLPAFNLVGLPETSVKEAKERVRSAIINAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAIGILAASEQVPKNALKEHEFVGELALSGHIRHCQGLLPVIVEARQQNTPLVIPLDNRDDAELVGFNKVYFASHL
QGLSEYLHGQSQLPGIEPSLEWIDTNQVDTGLCFSDVIGQYQAKLGLEIAAAGNHNVMLLGPPGTGKSMLASRLMQLLPP
LNYDEALEVATLHSVAGQVIEPKSFYKRPFRNPHHTSSAVSLVGGGSNPKPGEISLAHRGVLFLDEVVEFPRKVLDCLRE
PMETGEVVISRAAAKLKFSSRFQLIAAMNPSPCGDIDNARATPDQIQKYLSRLSGPFLDRFDLTIEVPRLPAGALTKSEP
STETSESIALRVSIARELQLARAGVLNSDLTGKQLKELGNFKQADLLFLEQSVNKLGLSVRSYHRLQRVARTIADLNQSH
AVERKHIAQALGYRAMDRLLNSLKTQY

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=173922 sps_RS15910 WP_077753420.1 3712198..3713721(+) (comM) [Shewanella psychrophila strain WP2]
ATGGCCATTGCCTGTGTCGCAACCAGAGCTAACAAAGGAGTCGATGCCCCTCCCGTTACCGTCGAAGTTCATCTCAGCAA
TGGATTGCCCGCGTTTAATCTCGTAGGCCTGCCGGAGACTTCGGTCAAGGAAGCGAAAGAGCGCGTTCGCAGCGCTATTA
TCAATGCTGGGTTTGAGTTCCCCATGCGCCGCATCACAGTGAATCTAGCCCCAGCCGATCTCCCCAAACAGGGTGGACGC
TACGATCTCCCCATCGCTATAGGTATTCTGGCTGCATCGGAACAAGTCCCAAAAAATGCACTAAAAGAACATGAATTTGT
TGGCGAACTTGCGCTTTCAGGTCACATCAGACACTGCCAGGGACTATTGCCCGTCATAGTAGAAGCAAGGCAACAGAATA
CACCTTTAGTGATCCCACTGGATAATCGTGATGACGCTGAACTTGTGGGTTTCAATAAGGTCTATTTTGCTTCGCATTTA
CAGGGATTGAGCGAATACCTCCATGGGCAATCACAGCTGCCTGGTATCGAACCAAGCCTGGAGTGGATCGATACAAATCA
AGTAGATACCGGGCTTTGCTTTAGTGACGTCATAGGACAATACCAGGCCAAGCTAGGCTTAGAAATTGCCGCTGCTGGCA
ACCATAACGTAATGCTTCTTGGGCCTCCTGGAACAGGCAAGAGCATGCTTGCAAGTCGTTTGATGCAGCTACTGCCACCA
CTGAATTACGATGAGGCTCTAGAGGTCGCTACATTACACTCGGTAGCAGGCCAAGTTATCGAGCCTAAATCCTTTTACAA
ACGTCCCTTTCGTAATCCTCATCACACCAGCTCGGCGGTCTCTTTGGTTGGCGGCGGCAGTAATCCCAAGCCTGGTGAGA
TCTCATTAGCTCATCGCGGTGTACTATTTCTCGATGAAGTGGTCGAATTTCCGAGAAAAGTTCTCGATTGCCTGCGAGAG
CCAATGGAGACTGGTGAAGTTGTTATCTCCCGCGCCGCAGCTAAGCTTAAATTCTCTAGTCGCTTTCAACTAATAGCGGC
GATGAATCCGAGTCCATGTGGCGACATTGATAATGCCAGAGCAACGCCAGATCAGATACAAAAATACCTGTCTCGTTTAT
CAGGCCCCTTCTTAGACAGGTTCGATCTCACCATAGAGGTCCCTCGCCTCCCGGCCGGCGCCTTGACCAAATCTGAGCCC
TCCACAGAAACCAGTGAATCCATAGCACTGCGAGTTAGCATTGCAAGAGAGTTACAACTGGCACGTGCGGGCGTACTCAA
TAGTGATTTAACGGGTAAACAACTTAAGGAATTAGGTAACTTTAAACAGGCCGACCTGCTTTTTCTGGAACAGAGCGTCA
ACAAGTTAGGTTTATCGGTAAGAAGCTACCATCGCTTACAGAGAGTCGCACGCACCATTGCCGACTTGAATCAAAGTCAT
GCCGTCGAACGCAAACACATAGCTCAAGCCTTGGGCTACAGAGCCATGGATCGACTGTTAAACAGCTTAAAGACGCAATA
CTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S6HS75

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.118

100

0.552
  comM Vibrio campbellii strain DS40M4

53.438

100

0.536
  comM Haemophilus influenzae Rd KW20

53.333

100

0.536
  comM Glaesserella parasuis strain SC1401

53.254

100

0.533
  comM Legionella pneumophila str. Paris

48.703

98.817

0.481
  comM Legionella pneumophila strain ERS1305867

48.703

98.817

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.935

97.83

0.41

Multiple sequence alignment