Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   WM43_RS11575 Genome accession   NZ_CP014774
Coordinates   2562888..2564402 (+) Length   504 a.a.
NCBI ID   WP_064338983.1    Uniprot ID   A0AAC9B967
Organism   Aeromonas veronii strain AVNIH1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2557888..2569402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WM43_RS11560 (WM43_11555) - 2559625..2560569 (-) 945 WP_064338981.1 branched-chain amino acid transaminase -
  WM43_RS11565 (WM43_11560) ilvM 2560582..2560860 (-) 279 WP_005342011.1 acetolactate synthase 2 small subunit -
  WM43_RS11570 (WM43_11565) ilvG 2560857..2562503 (-) 1647 WP_064338982.1 acetolactate synthase 2 catalytic subunit -
  WM43_RS11575 (WM43_11570) comM 2562888..2564402 (+) 1515 WP_064338983.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  WM43_RS11580 (WM43_11575) - 2564529..2565428 (+) 900 WP_043823224.1 acyltransferase -
  WM43_RS11585 (WM43_11580) - 2565435..2566400 (+) 966 WP_064338984.1 acyltransferase -
  WM43_RS11590 (WM43_11585) - 2566325..2566831 (-) 507 WP_064338985.1 DUF523 domain-containing protein -
  WM43_RS11595 (WM43_11590) - 2566828..2567478 (-) 651 WP_064338986.1 NUDIX hydrolase -
  WM43_RS11600 (WM43_11595) - 2567553..2568188 (+) 636 WP_005357452.1 nicotinamidase -
  WM43_RS11605 (WM43_11600) pncB 2568190..2569368 (+) 1179 WP_005342020.1 nicotinate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54534.48 Da        Isoelectric Point: 7.9889

>NTDB_id=173796 WM43_RS11575 WP_064338983.1 2562888..2564402(+) (comM) [Aeromonas veronii strain AVNIH1]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAALACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQNAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRARVLAARERMLSRNGKLNNLLDSREIEDICRLSPKDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=173796 WM43_RS11575 WP_064338983.1 2562888..2564402(+) (comM) [Aeromonas veronii strain AVNIH1]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACAGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGAGGCCGC
TTCGATCTGGCTATCGCTATCGGCATTCTCGCCGCTTCCAAGCAGATACCGGCAAAATATCTGCTCGATCACGAATTTTT
AGGGGAGTTGGCCCTGACAGGCGAAATTCGTCCCGTACTCGGGGTACTGCCTGCCGCACTCGCCTGCCGGGATGCGGGAC
GCACCCTGCTGGTACCGCGAGAGAACGGCCCGGAAGCCTCTCTCATTCAGGATGCCGAGGTGCGCACCGCCCACCAGCTG
CTGGCAGTCACCGCCTGGCTGGCAGGACAATACGAACTGCCGCTGCCGGATCCCCAAAACGCGGAGAGCCTGCCCGATGT
ACCAGATCTGCAGGATGTTATTGGTCAGTCTCAGGCCAAGCGGGCGCTGGAGATCGCCGCTGCTGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCGAGCCGTCTGCCCGGCATTCTGCCGCCGCTCAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCACGCGCCGGCCACTGGCACCACAGACCCTATCG
CACGCCCCACCACAGTGCCTCCGCAGTGGCGCTGGTGGGTGGTGGCAGCCACCCGCGGCCCGGCGAAATTTCGCTGGCCC
ACAACGGGGTGCTGTTTCTCGACGAGCTGCCCGAATTCGAGCGCAAGGTGCTCGACTCCCTGCGTGAGCCGCTGGAGACG
GGCCACATCACCATCAGCCGGGCCGCCCGCCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTCGGCGCCATGAATCCCAG
CCCCTGTGGCCACTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATCTTACGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGACCTGACAGTTGAGGTGCCGCTGCTGCCCAAGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAGTCGAGCCAGCAGATCCGCGCTCGGGTGCTGGCGGCGCGAGAGCGCATGCTGAGTCGTAACGGCAAGCTCAACAACCT
GCTGGATAGCCGTGAGATAGAGGATATTTGCCGCTTATCACCGAAAGATGCCGAATTTTTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCATCGCATCCTGCGGGTGTCACGCACCATCGCCGATCTGGCCGGGCAACCCGCCATC
GGCAAGGAGCATCTTATCGAGGCGCTCGGTTATCGCGCCATGGACAGGCTGCTGTCGCGACTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.347

99.603

0.631
  comM Vibrio campbellii strain DS40M4

62.351

99.603

0.621
  comM Haemophilus influenzae Rd KW20

61.858

100

0.621
  comM Glaesserella parasuis strain SC1401

60.947

100

0.613
  comM Legionella pneumophila str. Paris

50.794

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.794

100

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.443

100

0.466

Multiple sequence alignment