Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1978   Type   Machinery gene
Locus tag   A1D13_RS10230 Genome accession   NZ_CP014759
Coordinates   2238832..2239146 (-) Length   104 a.a.
NCBI ID   WP_027224483.1    Uniprot ID   -
Organism   Legionella pneumophila strain F4468     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2233832..2244146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1D13_RS10200 (A1D13_09970) - 2234258..2234758 (-) 501 WP_014844283.1 hypothetical protein -
  A1D13_RS10210 (A1D13_09975) - 2235250..2236110 (+) 861 WP_014844284.1 polysaccharide deacetylase family protein -
  A1D13_RS10215 (A1D13_09980) - 2236227..2237423 (-) 1197 WP_027224485.1 murein transglycosylase A -
  A1D13_RS10220 (A1D13_09985) lpp1976 2237533..2238090 (-) 558 WP_027224484.1 hypothetical protein Machinery gene
  A1D13_RS10225 (A1D13_09990) lpp1977 2238087..2238893 (-) 807 WP_050598156.1 PilW family protein Machinery gene
  A1D13_RS10230 (A1D13_09995) lpp1978 2238832..2239146 (-) 315 WP_027224483.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  A1D13_RS10235 (A1D13_10000) hisC 2239306..2240415 (+) 1110 WP_014844289.1 histidinol-phosphate transaminase -
  A1D13_RS10240 (A1D13_10005) - 2240452..2240793 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  A1D13_RS10245 (A1D13_10010) secF 2240982..2241899 (-) 918 WP_010947716.1 protein translocase subunit SecF -
  A1D13_RS10250 (A1D13_10015) secD 2241912..2243768 (-) 1857 WP_011214250.1 protein translocase subunit SecD -
  A1D13_RS10255 (A1D13_10020) yajC 2243790..2244125 (-) 336 WP_010947718.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 12263.42 Da        Isoelectric Point: 10.0591

>NTDB_id=173696 A1D13_RS10230 WP_027224483.1 2238832..2239146(-) (lpp1978) [Legionella pneumophila strain F4468]
MSKHKGFTLMEVLVSLMLMTTVVLMLVEQQLKTRDLINHLIWRIQGSQYLDQVDEALYISENRLPLPPSNYHFDIRRSQK
KIILNVTWFKKSQSIIRTYDLGAN

Nucleotide


Download         Length: 315 bp        

>NTDB_id=173696 A1D13_RS10230 WP_027224483.1 2238832..2239146(-) (lpp1978) [Legionella pneumophila strain F4468]
ATGAGCAAGCATAAGGGTTTTACTCTAATGGAAGTACTTGTGTCATTAATGCTAATGACAACGGTAGTTCTGATGTTAGT
GGAACAACAGTTGAAAACCAGAGATCTAATCAATCATCTTATCTGGCGAATCCAAGGTTCCCAATATCTAGATCAAGTAG
ATGAAGCATTATATATTAGTGAGAATAGACTCCCTCTGCCGCCTTCAAATTATCATTTTGATATCAGGCGATCTCAAAAG
AAAATCATTTTGAATGTTACGTGGTTTAAAAAAAGCCAGTCAATTATTCGCACCTATGATCTGGGTGCTAATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1978 Legionella pneumophila strain ERS1305867

99.038

100

0.99
  lpp1978 Legionella pneumophila str. Paris

97.115

100

0.971

Multiple sequence alignment