Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   A0V43_RS15060 Genome accession   NZ_CP014749
Coordinates   3077200..3077694 (-) Length   164 a.a.
NCBI ID   WP_063193503.1    Uniprot ID   A0A142D4M6
Organism   Geobacillus sp. JS12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3072200..3082694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0V43_RS15040 (A0V43_15040) rplI 3073335..3073784 (-) 450 WP_020754217.1 50S ribosomal protein L9 -
  A0V43_RS15045 (A0V43_15045) - 3073792..3075756 (-) 1965 Protein_3101 DHH family phosphoesterase -
  A0V43_RS15050 (A0V43_15050) - 3075803..3076729 (-) 927 WP_011232943.1 YybS family protein -
  A0V43_RS15055 (A0V43_15055) rpsR 3076866..3077102 (-) 237 WP_008880812.1 30S ribosomal protein S18 -
  A0V43_RS15060 (A0V43_15060) ssbA 3077200..3077694 (-) 495 WP_063193503.1 single-stranded DNA-binding protein Machinery gene
  A0V43_RS15065 (A0V43_15065) rpsF 3077725..3078012 (-) 288 WP_063193504.1 30S ribosomal protein S6 -
  A0V43_RS15070 (A0V43_15070) ychF 3078227..3079327 (-) 1101 WP_063193888.1 redox-regulated ATPase YchF -
  A0V43_RS15075 (A0V43_15075) - 3079567..3081588 (-) 2022 WP_063193505.1 molybdopterin-dependent oxidoreductase -
  A0V43_RS15080 (A0V43_15080) - 3081645..3081842 (-) 198 WP_011232948.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18399.26 Da        Isoelectric Point: 4.7126

>NTDB_id=173609 A0V43_RS15060 WP_063193503.1 3077200..3077694(-) (ssbA) [Geobacillus sp. JS12]
MINRVILVGRLTRDPELRYTPSGVAVATFTLAVNRPFTNQQGERETDFIQCVVWRRQAENVANFLKKGSLAGVDGRLQTR
SYENQEGRRVYVTEVVADSVQFLEPKGTSEQRGATAGGYYGDPFSFGQDQNHRHPDEKGFGRIDDDPFANDGQPIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=173609 A0V43_RS15060 WP_063193503.1 3077200..3077694(-) (ssbA) [Geobacillus sp. JS12]
ATGATTAACCGCGTCATTTTGGTCGGCAGGTTAACGAGAGATCCGGAGTTGCGTTACACTCCAAGCGGAGTGGCTGTTGC
CACGTTTACGCTCGCGGTCAACCGTCCGTTTACAAATCAGCAGGGCGAGCGGGAAACGGATTTTATCCAATGTGTCGTTT
GGCGCCGCCAGGCGGAAAACGTCGCCAACTTTTTGAAAAAGGGGAGCTTGGCTGGTGTCGACGGCCGACTGCAAACCCGC
AGCTATGAAAATCAAGAAGGTCGGCGCGTGTACGTGACGGAAGTGGTGGCTGATAGCGTCCAATTTCTTGAGCCGAAAGG
AACGAGCGAGCAGCGAGGGGCAACAGCAGGCGGCTACTACGGGGATCCATTCTCATTCGGACAAGATCAGAACCACCGAC
ATCCCGATGAAAAAGGGTTTGGCCGCATCGATGACGATCCTTTCGCCAATGACGGCCAGCCGATCGATATTTCTGATGAT
GATTTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142D4M6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

67.614

100

0.726
  ssb Latilactobacillus sakei subsp. sakei 23K

61.176

100

0.634
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

64.634

0.409
  ssb Vibrio cholerae strain A1552

35.593

100

0.384
  ssb Glaesserella parasuis strain SC1401

32.432

100

0.366

Multiple sequence alignment