Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   A0O21_RS07155 Genome accession   NZ_CP014699
Coordinates   1557501..1558163 (-) Length   220 a.a.
NCBI ID   WP_067063540.1    Uniprot ID   A0A172Q8T3
Organism   Streptococcus pantholopis strain TA 26     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1552501..1563163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0O21_RS07150 (A0O21_07150) hpf 1556876..1557427 (-) 552 WP_067063536.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  A0O21_RS07155 (A0O21_07155) comFC/cflB 1557501..1558163 (-) 663 WP_067063540.1 ComF family protein Machinery gene
  A0O21_RS07160 (A0O21_07160) comFA/cflA 1558163..1559461 (-) 1299 WP_067063544.1 DEAD/DEAH box helicase Machinery gene
  A0O21_RS07165 (A0O21_07165) - 1559519..1560163 (+) 645 WP_067063548.1 YigZ family protein -
  A0O21_RS07170 (A0O21_07170) cysK 1560382..1561311 (+) 930 WP_067063551.1 cysteine synthase A -
  A0O21_RS07175 (A0O21_07175) - 1561463..1561825 (-) 363 WP_067063554.1 S1 RNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25672.00 Da        Isoelectric Point: 9.7532

>NTDB_id=173361 A0O21_RS07155 WP_067063540.1 1557501..1558163(-) (comFC/cflB) [Streptococcus pantholopis strain TA 26]
MHCLLCQGSIKPKEIFLDIIFLKNSGHLICPSCWQSFERIGPDHCPSCFKNQCKGKCSDCLYWEKKGIAVCHKALFIYNQ
AMKEYFSRYKFQGDYLLRKVFASELKACLSRYKYYSIVPVPLGQERYEKRKFNQVEGLLEAANIDYINLLSRSDSVQQSS
RSKKERLHKNLGFKLKKYRKYPDNILIVDDIYTTGATLQSLKKLLYENGIKNVKTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=173361 A0O21_RS07155 WP_067063540.1 1557501..1558163(-) (comFC/cflB) [Streptococcus pantholopis strain TA 26]
ATGCACTGTCTGTTATGTCAAGGTTCTATTAAACCAAAAGAGATATTTTTGGATATCATTTTTTTAAAAAACAGCGGCCA
TCTTATTTGTCCCTCCTGCTGGCAGTCTTTTGAAAGAATCGGTCCTGACCACTGTCCGTCCTGTTTTAAAAATCAATGTA
AAGGGAAGTGCAGCGACTGTCTGTATTGGGAAAAAAAGGGGATCGCAGTTTGCCATAAAGCCCTTTTCATTTATAATCAA
GCTATGAAGGAATATTTCAGCCGCTATAAATTTCAAGGCGACTACCTTTTAAGAAAAGTTTTTGCTTCAGAATTAAAGGC
ATGTCTGAGTCGGTACAAATATTACAGTATTGTGCCGGTTCCTTTGGGTCAAGAGAGATATGAGAAACGAAAATTTAACC
AGGTTGAGGGGCTTTTGGAAGCAGCTAATATCGATTACATCAACCTTCTCAGCCGTTCCGATTCAGTACAACAGTCTAGC
AGATCAAAAAAAGAAAGGCTTCATAAAAATTTAGGTTTTAAACTAAAAAAATACAGGAAATATCCCGATAATATCCTGAT
TGTGGATGACATTTATACAACGGGCGCAACTCTGCAGAGCTTAAAAAAACTTCTTTATGAAAATGGAATTAAAAATGTAA
AAACCTTTTCTCTGGCTCGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172Q8T3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

50.455

100

0.505
  comFC/cflB Streptococcus pneumoniae D39

50.455

100

0.505
  comFC/cflB Streptococcus pneumoniae R6

50.455

100

0.505
  comFC/cflB Streptococcus pneumoniae TIGR4

50.455

100

0.505
  comFC/cflB Streptococcus mitis NCTC 12261

50.455

100

0.505
  comFC/cflB Streptococcus mitis SK321

49.091

100

0.491

Multiple sequence alignment