Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AVR78_RS20150 Genome accession   NZ_CP014696
Coordinates   3925458..3926978 (-) Length   506 a.a.
NCBI ID   WP_004886875.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain ATCC 700603 isolate K6     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3920458..3931978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVR78_RS20140 (AVR78_05165) hdfR 3924155..3924976 (-) 822 WP_004886879.1 HTH-type transcriptional regulator HdfR -
  AVR78_RS20145 (AVR78_05170) - 3925095..3925433 (+) 339 WP_004886877.1 DUF413 domain-containing protein -
  AVR78_RS20150 (AVR78_05175) comM 3925458..3926978 (-) 1521 WP_004886875.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AVR78_RS20160 ilvL 3927333..3927431 (+) 99 WP_001311244.1 ilv operon leader peptide -
  AVR78_RS30675 ilvX 3927519..3927569 (+) 51 WP_224423709.1 peptide IlvX -
  AVR78_RS20165 (AVR78_05185) ilvG 3927572..3929218 (+) 1647 WP_004886873.1 acetolactate synthase 2 catalytic subunit -
  AVR78_RS20170 (AVR78_05190) ilvM 3929215..3929472 (+) 258 WP_004886870.1 acetolactate synthase 2 small subunit -
  AVR78_RS20175 (AVR78_05195) ilvE 3929489..3930418 (+) 930 WP_002883171.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55225.54 Da        Isoelectric Point: 8.7757

>NTDB_id=173327 AVR78_RS20150 WP_004886875.1 3925458..3926978(-) (comM) [Klebsiella quasipneumoniae strain ATCC 700603 isolate K6]
MSLAIVYTRAALGIEAPLITVEVHLSNGLPGLTMVGLPETTVKEARDRVRSALINSGYAFPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLNTTRLNQYEFVGELALTGGLRGVPGAIPSAMEAIKAGRRIVVSSDNAAEVGLIGGSDCLVADHL
QEVCAFLAGQTSLSRPLTEAPSVDERGEDLRDVIGQQQGKRALEIVAAGGHNLLLIGPPGTGKTMLASRLPGLLPPLSNQ
EALESTAIQSLVNLHTAKTRWRQRPFRAPHHSASLAAMVGGGSIPVPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GKIHISRSRAKIDYPARFQLIAAMNPSPTGHYQGKHNRTSPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGILSQGTQGE
ESSATVRQRVLAARERQMLRQNKLNAHLENREMKSCCHLRREDAVWLEQTLTQLGLSIRAWQRLLKVARTIADLAEAEEI
ERRHLQEALSYRAIDRMLNHLQKMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=173327 AVR78_RS20150 WP_004886875.1 3925458..3926978(-) (comM) [Klebsiella quasipneumoniae strain ATCC 700603 isolate K6]
ATGTCGCTCGCCATCGTCTATACCCGCGCGGCGCTCGGTATCGAAGCGCCATTGATTACTGTCGAGGTTCATCTCAGCAA
CGGTCTGCCCGGCCTGACTATGGTCGGACTGCCGGAGACCACCGTGAAAGAGGCCCGTGACCGGGTTCGCAGCGCCTTGA
TCAACAGCGGCTACGCTTTCCCTGCGAAGAAAATAACCATTAACCTGGCGCCAGCGGATCTGCCTAAAGAGGGCGGGCGA
TACGATCTACCTATCGCTCTCGCGCTTCTCGTTGCCTCAGAGCAGCTCAACACGACGCGACTGAATCAATATGAGTTTGT
GGGCGAACTCGCCCTCACAGGTGGGTTACGCGGCGTTCCAGGGGCGATCCCCAGCGCAATGGAGGCCATCAAAGCCGGCC
GGCGCATCGTCGTCTCCTCTGATAATGCGGCTGAGGTCGGCCTGATCGGCGGCAGCGACTGCCTGGTCGCCGACCATCTG
CAGGAGGTGTGTGCTTTTCTCGCGGGGCAGACATCGCTATCGCGTCCTCTCACCGAGGCACCCTCTGTTGATGAACGCGG
CGAAGATCTGCGCGATGTTATCGGCCAGCAGCAGGGCAAGCGAGCGCTGGAGATTGTGGCCGCAGGGGGTCACAACCTGC
TCCTGATCGGCCCACCCGGCACCGGGAAAACCATGCTTGCCAGCCGGCTACCCGGTCTCCTGCCGCCATTAAGCAATCAG
GAAGCCCTGGAGAGCACGGCCATTCAGAGCCTGGTCAATCTGCATACCGCGAAGACCCGGTGGCGTCAGAGGCCGTTTCG
CGCACCTCATCATAGCGCTTCGCTGGCAGCGATGGTGGGCGGCGGCTCGATACCGGTCCCCGGTGAGATTTCCCTGGCCC
ATAATGGCGTGCTGTTTCTTGATGAGCTGCCGGAGTTTGAGCGGCGTGTACTGGATGCGCTGCGCGAACCCATTGAGTCA
GGCAAGATCCATATATCACGCTCGCGCGCCAAAATTGACTATCCGGCGCGCTTTCAGCTTATCGCGGCAATGAACCCAAG
CCCGACAGGGCATTATCAGGGCAAACATAATCGTACATCGCCTGAGCAGACATTACGTTATCTGGGACGTCTGTCAGGCC
CCTTCCTTGACCGCTTCGATCTCTCCTTAGAGATCCCGCTGCCGCCGCCAGGGATACTGAGCCAGGGCACGCAGGGCGAA
GAGTCTAGCGCAACGGTCCGACAACGGGTGCTGGCGGCGCGCGAACGGCAAATGCTCAGACAAAATAAGCTCAATGCCCA
CCTTGAGAATCGTGAAATGAAGAGCTGCTGCCACTTACGGCGGGAGGACGCTGTCTGGCTGGAACAGACGCTAACGCAGC
TGGGGCTCTCTATACGAGCCTGGCAGCGTCTGTTAAAGGTGGCGAGAACCATTGCCGATCTGGCAGAGGCTGAAGAGATT
GAACGCCGTCATTTGCAGGAGGCGCTCAGCTATCGGGCGATAGACCGGATGCTAAACCATCTGCAGAAAATGATGGCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.118

100

0.605
  comM Vibrio cholerae strain A1552

60.04

99.407

0.597
  comM Glaesserella parasuis strain SC1401

59.566

100

0.597
  comM Vibrio campbellii strain DS40M4

59.722

99.605

0.595
  comM Legionella pneumophila str. Paris

50

98.024

0.49
  comM Legionella pneumophila strain ERS1305867

50

98.024

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.814

100

0.453

Multiple sequence alignment