Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A0U92_RS12030 Genome accession   NZ_CP014692
Coordinates   2680085..2680636 (-) Length   183 a.a.
NCBI ID   WP_077813436.1    Uniprot ID   A0A1U9KHU3
Organism   Acetobacter aceti strain TMW2.1153     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2675085..2685636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0U92_RS12010 (A0U92_11945) - 2675321..2676754 (+) 1434 WP_236748121.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  A0U92_RS12015 (A0U92_11950) - 2676878..2677723 (-) 846 WP_077813434.1 EcsC family protein -
  A0U92_RS12020 (A0U92_11955) - 2677867..2678412 (+) 546 WP_236748122.1 hypothetical protein -
  A0U92_RS12025 (A0U92_11960) - 2678516..2679862 (+) 1347 WP_077813435.1 autotransporter strand-loop-strand O-heptosyltransferase -
  A0U92_RS12030 (A0U92_11965) ssb 2680085..2680636 (-) 552 WP_077813436.1 single-stranded DNA-binding protein Machinery gene
  A0U92_RS12035 (A0U92_11970) - 2680834..2681241 (+) 408 WP_236748123.1 hypothetical protein -
  A0U92_RS12040 (A0U92_11975) - 2681338..2681823 (-) 486 WP_077813437.1 helix-turn-helix domain-containing protein -
  A0U92_RS12045 (A0U92_11980) lnt 2681905..2683488 (-) 1584 WP_077813438.1 apolipoprotein N-acyltransferase -
  A0U92_RS12050 (A0U92_11985) - 2683516..2684364 (-) 849 WP_077813439.1 GNAT family N-acetyltransferase -
  A0U92_RS12055 (A0U92_11990) - 2684361..2684786 (-) 426 WP_236748370.1 transcriptional repressor -
  A0U92_RS12060 (A0U92_11995) - 2685049..2685300 (+) 252 WP_077813441.1 sulfurtransferase TusA family protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19242.07 Da        Isoelectric Point: 5.3670

>NTDB_id=173278 A0U92_RS12030 WP_077813436.1 2680085..2680636(-) (ssb) [Acetobacter aceti strain TMW2.1153]
MAGSVNKVILVGNLGKDPEIRTSQNGQKIVSLSVATSDTWNDRASGERRERTEWHRVVVFNDRLADVAERFLRKGRKVYL
EGVLQTRKWTDQSGQEKYTTEVVLDRFRGELVLLDGRGSGDGDDAGGYGGGSEAAGGGYGGGASAARRLPGGGGASAPRS
SGPASTGGWDAPGGSDLDDEIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=173278 A0U92_RS12030 WP_077813436.1 2680085..2680636(-) (ssb) [Acetobacter aceti strain TMW2.1153]
ATGGCAGGCAGCGTGAACAAGGTCATTCTGGTCGGGAATCTCGGGAAAGATCCGGAAATCCGTACCAGCCAGAACGGGCA
GAAAATCGTGTCGCTTTCAGTGGCTACGAGCGACACATGGAACGACCGCGCCTCTGGCGAGCGGCGTGAACGTACCGAGT
GGCATCGTGTTGTGGTGTTCAATGACCGGTTGGCGGACGTAGCGGAACGATTCCTGAGAAAAGGCCGGAAGGTCTATCTC
GAAGGTGTTTTGCAGACCCGCAAATGGACCGATCAGTCAGGACAGGAAAAATACACGACGGAGGTCGTTCTGGATCGGTT
CCGTGGCGAACTGGTGCTGCTGGATGGTCGGGGTTCCGGTGATGGTGACGATGCCGGTGGTTACGGTGGCGGCTCGGAAG
CGGCTGGTGGCGGTTATGGTGGTGGCGCGTCGGCCGCTCGTCGTCTTCCCGGCGGCGGTGGTGCTTCAGCTCCGCGTAGC
AGCGGTCCTGCATCCACAGGCGGCTGGGATGCGCCGGGTGGCAGCGATCTGGACGACGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1U9KHU3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.421

100

0.503
  ssb Vibrio cholerae strain A1552

44.693

97.814

0.437
  ssb Neisseria meningitidis MC58

41.081

100

0.415
  ssb Neisseria gonorrhoeae MS11

41.081

100

0.415

Multiple sequence alignment