Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A0U90_RS10275 Genome accession   NZ_CP014681
Coordinates   2198413..2198931 (-) Length   172 a.a.
NCBI ID   WP_029603601.1    Uniprot ID   -
Organism   Kozakia baliensis strain NBRC 16680     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2193413..2203931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0U90_RS15545 - 2194125..2194265 (-) 141 WP_162493420.1 hypothetical protein -
  A0U90_RS10260 (A0U90_10255) - 2194483..2194956 (-) 474 WP_029603605.1 peptidylprolyl isomerase -
  A0U90_RS10265 (A0U90_10260) coaD 2195000..2195512 (-) 513 WP_029603603.1 pantetheine-phosphate adenylyltransferase -
  A0U90_RS10270 (A0U90_10265) gyrA 2195496..2198306 (-) 2811 WP_408734692.1 DNA gyrase subunit A -
  A0U90_RS10275 (A0U90_10270) ssb 2198413..2198931 (-) 519 WP_029603601.1 single-stranded DNA-binding protein Machinery gene
  A0U90_RS10280 (A0U90_10275) uvrA 2199100..2202090 (+) 2991 WP_070405466.1 excinuclease ABC subunit UvrA -
  A0U90_RS10285 (A0U90_10280) - 2202093..2203037 (+) 945 WP_070405467.1 glyoxylate/hydroxypyruvate reductase A -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18865.74 Da        Isoelectric Point: 5.9940

>NTDB_id=173253 A0U90_RS10275 WP_029603601.1 2198413..2198931(-) (ssb) [Kozakia baliensis strain NBRC 16680]
MAGSVNKVILVGNLGRDPETRNSQSGSKIVNMTIATSETWNDRNSGEKRERTEWHRVVIFNDRLADVAERFLRKGRKVYI
EGQLQTRKWTDQSGQERYTTEIVLDRFRGELVLIDSNRGGESEAGGGYESGPPRQLNAPRGGGGMSQPQRSGGGSGGGWD
APGGDLDDEIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=173253 A0U90_RS10275 WP_029603601.1 2198413..2198931(-) (ssb) [Kozakia baliensis strain NBRC 16680]
ATGGCAGGCAGCGTCAATAAGGTAATTTTGGTCGGAAATCTGGGGCGCGACCCAGAGACGCGGAATTCGCAATCGGGGTC
GAAGATCGTCAACATGACGATTGCGACCTCCGAAACCTGGAACGACCGCAATTCGGGTGAGAAGCGCGAGCGGACCGAAT
GGCATCGCGTGGTGATCTTCAACGATCGTCTGGCCGATGTGGCGGAGCGTTTTTTGCGCAAGGGGCGCAAGGTTTACATC
GAAGGGCAATTGCAGACGCGTAAATGGACGGATCAATCCGGCCAGGAGCGTTATACGACCGAGATCGTGCTGGACCGTTT
CCGTGGCGAGTTGGTGCTGATCGACAGCAACCGTGGCGGAGAGTCCGAGGCGGGCGGTGGTTATGAGAGCGGGCCGCCGC
GCCAGTTGAATGCGCCCCGTGGTGGTGGCGGGATGTCGCAGCCGCAGCGCAGCGGTGGTGGCAGTGGTGGTGGCTGGGAT
GCGCCCGGCGGCGACCTGGACGACGAAATACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.222

100

0.494
  ssb Glaesserella parasuis strain SC1401

44.149

100

0.483
  ssb Neisseria meningitidis MC58

40.217

100

0.43
  ssb Neisseria gonorrhoeae MS11

39.674

100

0.424

Multiple sequence alignment