Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PG2T_RS13220 Genome accession   NZ_CP014671
Coordinates   2788349..2789866 (+) Length   505 a.a.
NCBI ID   WP_068806437.1    Uniprot ID   A0A1B1YWQ7
Organism   Immundisolibacter cernigliae strain TR3.2     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2783349..2794866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG2T_RS13205 (PG2T_13225) - 2786053..2787375 (-) 1323 WP_162493359.1 ammonium transporter -
  PG2T_RS13210 (PG2T_13230) - 2787437..2787775 (-) 339 WP_068806431.1 P-II family nitrogen regulator -
  PG2T_RS13215 (PG2T_13235) - 2788105..2788332 (+) 228 WP_068806434.1 accessory factor UbiK family protein -
  PG2T_RS13220 (PG2T_13240) comM 2788349..2789866 (+) 1518 WP_068806437.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PG2T_RS13225 (PG2T_13245) trxA 2789999..2790325 (+) 327 WP_068806441.1 thioredoxin TrxA -
  PG2T_RS13230 (PG2T_13250) rho 2790590..2791846 (+) 1257 WP_068806444.1 transcription termination factor Rho -
  PG2T_RS13235 (PG2T_13255) - 2791901..2792878 (+) 978 WP_068806447.1 malate dehydrogenase -
  PG2T_RS13240 (PG2T_13260) rpmE 2792963..2793169 (+) 207 WP_068806450.1 50S ribosomal protein L31 -
  PG2T_RS13245 (PG2T_13265) - 2793301..2793960 (+) 660 WP_236953261.1 thermonuclease family protein -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 53419.43 Da        Isoelectric Point: 7.9173

>NTDB_id=173199 PG2T_RS13220 WP_068806437.1 2788349..2789866(+) (comM) [Immundisolibacter cernigliae strain TR3.2]
MSLAILRSRAQFGIDAPLVTIEAHLTGGLPALAIVGLPETAVREARDRVRSALLNSGFEFPARRVTINLAPADLPKEGGR
FDLGIALAILVASGQLPTDCLDGYEFIGELGLGGELRPVRGVLPVALQAQRAGARLVLPQANAAEAALAPDLTAYGAEHL
LAVCGHLTGNAPLAAAQRAVPLDGACVPDLADVRGQPAARRALEIAAAGGHSLLMLGPPGAGKTMLATRLPGILPPLTEQ
EALETAAVQSISVGGFDVRHWGQRPVRAPHHTASAAALAGGGTTPRPGEISLAHHGVLFLDELPEFDRQVLEVLREPLES
GHISIARAALKAEFPARFQLVAAMNPCPCGYLGDAGGRCRCTPEQVRRYRGRLSGPLLDRIDLHVELPPVAHELLLAQEH
AGAEPSAAVRERVQAAQQRQFARSGCLNARLDPAGLRRHARLTESQQQFLARAIGTLGLSARATHRVLRIARTCADLAGS
EALDMPHLAEALQYRLLDRRPHSAY

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=173199 PG2T_RS13220 WP_068806437.1 2788349..2789866(+) (comM) [Immundisolibacter cernigliae strain TR3.2]
ATGTCGCTGGCGATCCTGCGCAGCCGCGCCCAGTTCGGCATCGACGCGCCGCTGGTCACGATCGAGGCGCATCTGACTGG
AGGCCTCCCGGCGCTGGCCATCGTCGGTCTGCCGGAAACCGCCGTGCGCGAGGCCAGGGACCGCGTGCGCAGCGCGCTGC
TGAACAGCGGCTTCGAATTTCCAGCCCGGCGCGTCACCATCAACCTCGCCCCGGCCGACCTGCCCAAGGAAGGTGGACGC
TTCGATCTGGGCATCGCGCTGGCCATCCTGGTCGCCTCCGGCCAGCTCCCGACGGATTGTCTGGACGGCTACGAGTTCAT
CGGCGAACTGGGCCTGGGCGGCGAACTGCGTCCGGTGCGTGGCGTATTGCCGGTGGCCTTGCAGGCGCAGCGCGCCGGTG
CGCGTCTGGTGCTGCCGCAGGCCAACGCGGCTGAAGCGGCGCTGGCGCCGGATCTGACCGCCTACGGTGCCGAACACCTG
CTGGCGGTGTGCGGCCACCTGACCGGCAACGCGCCGCTTGCGGCAGCGCAGCGGGCGGTACCGTTGGACGGCGCCTGCGT
GCCCGATCTGGCCGACGTGCGCGGCCAGCCAGCTGCGCGCCGGGCGCTGGAAATCGCCGCCGCCGGCGGTCACAGCCTGC
TGATGCTGGGCCCGCCGGGCGCCGGCAAGACCATGCTGGCCACGCGCCTGCCGGGCATCCTGCCGCCGCTGACCGAGCAG
GAGGCGCTCGAGACGGCGGCGGTGCAGTCGATCAGCGTCGGGGGTTTCGATGTCCGCCACTGGGGCCAGCGGCCGGTGCG
CGCACCCCACCACACGGCCTCCGCCGCGGCACTGGCCGGCGGCGGCACCACGCCGCGGCCGGGCGAGATCTCGCTCGCCC
ATCACGGCGTGCTGTTTCTGGACGAGCTGCCGGAGTTCGACCGCCAGGTGCTGGAAGTGCTGCGCGAGCCGCTGGAGTCC
GGGCACATCAGCATTGCCCGGGCGGCGCTGAAAGCCGAATTCCCGGCCCGTTTTCAGCTGGTGGCGGCCATGAATCCGTG
CCCCTGCGGGTATCTGGGCGATGCCGGCGGCCGCTGTCGCTGCACCCCGGAGCAGGTGCGCCGTTACCGCGGCCGCTTGT
CCGGACCGCTGCTGGACCGCATCGACCTGCACGTGGAGCTGCCGCCGGTCGCGCACGAGCTGCTGCTGGCGCAGGAGCAC
GCCGGCGCCGAGCCGTCGGCCGCGGTGCGCGAGCGCGTGCAAGCAGCGCAGCAGCGCCAGTTCGCCCGCAGTGGTTGCCT
GAACGCGCGTCTGGACCCGGCCGGCCTGCGCCGGCATGCGCGGCTGACCGAGTCCCAGCAGCAGTTCCTGGCGCGCGCCA
TCGGCACCCTCGGGCTGTCCGCGCGGGCCACGCACCGGGTGCTGCGCATTGCCCGCACCTGTGCCGATCTTGCCGGCAGC
GAGGCGCTCGACATGCCGCACCTGGCCGAGGCGCTGCAGTATCGCTTGCTCGATCGGCGGCCCCACAGTGCGTATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B1YWQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

53.77

99.802

0.537
  comM Vibrio campbellii strain DS40M4

53.8

99.01

0.533
  comM Vibrio cholerae strain A1552

53.6

99.01

0.531
  comM Glaesserella parasuis strain SC1401

52.286

99.604

0.521
  comM Legionella pneumophila str. Paris

49.8

99.01

0.493
  comM Legionella pneumophila strain ERS1305867

49.8

99.01

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.378

98.614

0.438

Multiple sequence alignment