Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AC731_RS15900 Genome accession   NZ_CP014646
Coordinates   3423038..3424540 (+) Length   500 a.a.
NCBI ID   WP_004260207.1    Uniprot ID   A0A127K8J5
Organism   Thauera humireducens strain SgZ-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3418038..3429540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AC731_RS15875 (AC731_015875) - 3418385..3419806 (+) 1422 WP_237266547.1 aspartate kinase -
  AC731_RS15880 (AC731_015880) - 3419974..3421305 (-) 1332 WP_004260186.1 ammonium transporter -
  AC731_RS15885 (AC731_015885) glnK 3421320..3421658 (-) 339 WP_004260191.1 P-II family nitrogen regulator -
  AC731_RS15890 (AC731_015890) - 3421688..3422410 (-) 723 WP_048707515.1 TorF family putative porin -
  AC731_RS15895 (AC731_015895) - 3422690..3422947 (+) 258 WP_004260204.1 accessory factor UbiK family protein -
  AC731_RS15900 (AC731_015900) comM 3423038..3424540 (+) 1503 WP_004260207.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AC731_RS15905 (AC731_015905) - 3424589..3424981 (-) 393 WP_004260211.1 rhodanese-like domain-containing protein -
  AC731_RS15910 (AC731_015910) - 3425107..3425841 (-) 735 WP_004260215.1 ABC transporter ATP-binding protein -
  AC731_RS15915 (AC731_015915) - 3425831..3426604 (-) 774 WP_048707519.1 ABC transporter ATP-binding protein -
  AC731_RS15920 (AC731_015920) - 3426601..3427698 (-) 1098 WP_004260221.1 ABC transporter permease subunit -
  AC731_RS15925 (AC731_015925) - 3427714..3428646 (-) 933 WP_004260224.1 branched-chain amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 52915.69 Da        Isoelectric Point: 8.4289

>NTDB_id=172977 AC731_RS15900 WP_004260207.1 3423038..3424540(+) (comM) [Thauera humireducens strain SgZ-1]
MSLALVRSRALDGLDAPEVTVEVHLANGLPAFSLVGLPDTEVREARDRVRAALQTSQFEFPQRRITVNLAPADLPKEGGR
FDLAIAVGILVASGQVAGRLLDGLEFCGELSLNGELRAVRGVLAVALAAGRARRSLVVATANAPEAALARTATVLPAASL
CAVAAHLNGHTPLPPTVLDNPAAAATACAPDLADVRGQLQARRALEVAAAGAHSLLLFGPPGTGKSMLAQRLPGLLPPML
EHEALETAAVCSLEGSFDASRWAQRPFRSPHHSASAAALVGGGATPRPGEISLAHNGVLYLDELPEFDRRVLESLREPLE
TGHISVSRARRRAEFPARFQLVAAMNPCPCGYAGHPRKPCRCTPEQVARYRGKLSGPLLDRIDLVVEVPVLAHEELATAV
PAPSSADVRARVVQARAQQMERQGDVNARLDSRGVERFCLPDAAGAALLQQAMNRLDLSARAYHRILRVARTLADMAGAA
QPGAAHVAEAIQYRRSLDGR

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=172977 AC731_RS15900 WP_004260207.1 3423038..3424540(+) (comM) [Thauera humireducens strain SgZ-1]
ATGTCGCTTGCACTCGTGCGCAGCCGCGCACTCGATGGTCTCGACGCGCCGGAGGTCACGGTCGAGGTGCATCTGGCCAA
CGGCCTGCCCGCCTTCAGTCTCGTCGGCCTGCCCGACACCGAGGTACGCGAGGCGCGCGACCGGGTGCGTGCGGCCCTTC
AGACCTCGCAGTTCGAGTTCCCGCAGCGGCGCATCACGGTCAATCTGGCGCCTGCCGATCTGCCGAAGGAGGGCGGGCGC
TTCGATCTGGCGATCGCCGTGGGCATTCTTGTCGCTTCCGGCCAGGTCGCCGGCAGGCTGCTCGACGGGCTGGAGTTCTG
CGGCGAGCTGTCGCTCAATGGCGAGCTGCGCGCGGTGCGCGGCGTGCTTGCCGTGGCGCTGGCCGCAGGGCGTGCGCGGC
GCAGTCTCGTGGTGGCGACGGCCAACGCGCCCGAAGCGGCGCTGGCGCGTACCGCGACCGTGTTGCCGGCGGCCAGCCTG
TGTGCGGTGGCGGCGCACCTCAATGGCCACACGCCGCTGCCGCCGACCGTGCTCGACAATCCGGCCGCTGCCGCCACGGC
GTGCGCGCCCGACCTTGCCGATGTGCGCGGGCAGCTCCAGGCGCGCCGTGCGCTGGAAGTAGCCGCCGCGGGCGCGCACT
CGCTGCTGCTGTTCGGTCCGCCGGGCACGGGCAAGTCCATGCTGGCGCAGCGGCTGCCCGGCCTGCTGCCACCCATGCTC
GAACATGAAGCGCTCGAGACCGCGGCCGTGTGTTCACTCGAAGGCAGTTTCGATGCGTCGCGCTGGGCCCAGCGCCCCTT
CCGCAGTCCGCATCACTCGGCCTCGGCGGCGGCACTGGTGGGCGGCGGGGCGACGCCGCGGCCGGGCGAGATCTCGCTGG
CCCACAACGGGGTGCTCTACCTCGACGAGTTGCCCGAGTTCGACCGCCGTGTGCTCGAATCCCTGCGCGAACCGCTGGAA
ACAGGCCATATCAGCGTCTCGCGCGCCCGCAGACGTGCGGAGTTCCCCGCCCGGTTCCAGTTGGTGGCAGCGATGAATCC
CTGTCCCTGCGGCTATGCGGGACACCCGCGAAAGCCCTGCAGGTGCACGCCCGAACAGGTTGCCCGCTATCGCGGAAAAC
TCTCCGGGCCGCTGCTGGACCGCATCGACCTGGTGGTCGAGGTTCCGGTGCTGGCGCACGAGGAGCTCGCCACGGCGGTC
CCGGCGCCCTCGTCAGCGGACGTGCGGGCGCGCGTGGTGCAGGCGCGGGCGCAGCAGATGGAACGCCAGGGCGACGTGAA
TGCGCGGCTCGACAGCCGCGGTGTGGAACGTTTCTGCCTGCCGGATGCGGCGGGCGCAGCCCTGCTGCAGCAGGCGATGA
ATCGTCTGGATCTCTCGGCGCGCGCCTATCACCGCATCCTGCGGGTGGCGCGCACGCTGGCCGACATGGCAGGTGCCGCG
CAGCCGGGCGCGGCGCATGTGGCGGAGGCGATCCAGTACCGCCGCAGTCTGGACGGTCGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A127K8J5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.839

99.2

0.544
  comM Haemophilus influenzae Rd KW20

54.2

100

0.542
  comM Vibrio campbellii strain DS40M4

54.326

99.4

0.54
  comM Glaesserella parasuis strain SC1401

51.8

100

0.518
  comM Legionella pneumophila str. Paris

48.915

100

0.496
  comM Legionella pneumophila strain ERS1305867

48.915

100

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.118

100

0.45

Multiple sequence alignment