Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VVCECT4999_RS16610 Genome accession   NZ_CP014636
Coordinates   3368060..3369583 (-) Length   507 a.a.
NCBI ID   WP_039451446.1    Uniprot ID   -
Organism   Vibrio vulnificus strain CECT 4999     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3363060..3374583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VVCECT4999_RS16590 (VVCECT4999_15575) - 3364345..3365331 (+) 987 WP_039451448.1 serine/threonine protein kinase -
  VVCECT4999_RS16595 (VVCECT4999_15580) - 3365364..3365969 (+) 606 WP_017789622.1 thiol:disulfide interchange protein DsbA/DsbL -
  VVCECT4999_RS16600 (VVCECT4999_15585) - 3366023..3366904 (-) 882 WP_017419858.1 acyltransferase -
  VVCECT4999_RS16605 (VVCECT4999_15590) - 3367047..3368021 (+) 975 WP_017419857.1 DUF2860 domain-containing protein -
  VVCECT4999_RS16610 (VVCECT4999_15595) comM 3368060..3369583 (-) 1524 WP_039451446.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VVCECT4999_RS16615 (VVCECT4999_15600) ilvG 3370053..3371699 (+) 1647 WP_011151435.1 acetolactate synthase 2 catalytic subunit -
  VVCECT4999_RS16620 (VVCECT4999_15605) ilvM 3371711..3371995 (+) 285 WP_011079065.1 acetolactate synthase 2 small subunit -
  VVCECT4999_RS16625 (VVCECT4999_15610) ilvE 3372007..3372945 (+) 939 WP_011079064.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54727.90 Da        Isoelectric Point: 8.8059

>NTDB_id=172876 VVCECT4999_RS16610 WP_039451446.1 3368060..3369583(-) (comM) [Vibrio vulnificus strain CECT 4999]
MGLAIIHSRASVGVEAPSVSVEVHISNGLPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQISVQFLQQHEFVGELALSGELRAVKGVLPAALAAKGVSRSLVVPHANGDQAALVGKNMHKSACSL
IEVCAHLCGQQALSLHQTKQALQPSSHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSE
EEAMETAAVASLTQSDINEHNWKQRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSMREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARANPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTALVKERVAQARERMQLRNGKVNALLGTREIEAFCPLSKQDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGAPQ
ITRAHLAEALGYRAMDRLLKQLTLQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=172876 VVCECT4999_RS16610 WP_039451446.1 3368060..3369583(-) (comM) [Vibrio vulnificus strain CECT 4999]
ATGGGGTTGGCGATTATTCATAGCCGTGCCAGTGTGGGCGTCGAAGCGCCTTCCGTGAGCGTGGAAGTGCACATCAGTAA
CGGCTTACCGGGATTTACCTTGGTTGGGTTGCCGGAAACCACCGTAAAGGAATCAAAAGATCGCGTACGCAGTGCGATCG
TCAACAGTAACTTTCAATTTCCTGCCAAGCGGATCACCGTCAACTTGGCGCCCGCCGATCTGCCCAAAGAAGGGGGACGC
TTTGACTTGCCGATCGCACTCGGTATTTTAGCCGCTTCTGAGCAGATCTCCGTTCAGTTTCTCCAGCAACATGAATTTGT
CGGTGAGTTAGCCTTAAGTGGTGAGCTACGAGCGGTGAAAGGGGTTTTGCCAGCCGCTCTTGCCGCCAAAGGGGTCTCCC
GCAGTTTGGTGGTACCTCATGCGAATGGGGATCAAGCCGCCTTGGTGGGCAAGAACATGCATAAGTCGGCGTGTTCGCTG
ATTGAAGTTTGTGCCCATTTATGTGGCCAGCAAGCCCTGTCATTACATCAAACCAAGCAAGCATTGCAGCCCTCATCACA
TGGTCGAGATTTACAAGACATCATTGGTCAACAACAAGGAAAGCGAGCGCTAGAAATTGCAGCGGCAGGTAATCACAATT
TGTTGTTTTTAGGGCCTCCTGGGACTGGAAAAACCATGCTGGCGTCACGTTTACGAGATTTGTTGCCTGAAATGAGTGAG
GAAGAGGCGATGGAAACGGCAGCGGTGGCTTCTTTAACACAAAGCGATATCAACGAGCACAATTGGAAGCAGCGGCCATT
TCGCGCGCCGCATCACTCGAGTTCTATGGCAGCGCTGGTGGGCGGTGGAACCATTCCGCGTCCCGGAGAAATCTCACTTG
CCCACAACGGCTTACTGTTTTTGGATGAGATGCCGGAATTTGAGCGCAAAGTGCTCGATTCAATGCGTGAACCGCTAGAG
TCTGGGGAAATCATCATTTCACGAGCACAAGGTAAAACTCGTTTTCCTGCTCGCTTTCAGTTGGTCGGTGCGTTGAATCC
GAGCCCTACGGGCTATTACGAAGGGAACCAAGCTCGCGCCAATCCTCAGGCGATTTTGCGTTATTTAGGCCGTTTATCGG
GCCCACTGTTGGATCGTTTTGATATGTCACTCGAGATCCCTGCATTACCCAAAGGCACATTGGCGGAAGGGGGGGACCGA
GGTGAACCAACGGCGTTGGTGAAGGAGCGAGTGGCGCAGGCGAGAGAGCGTATGCAGCTTCGTAATGGCAAGGTGAATGC
TCTGTTAGGCACCCGAGAAATCGAAGCGTTTTGCCCATTGAGTAAGCAAGATGCCGAGTTTCTTGAAACGGCGTTGCACC
GTTTGGGGTTATCGATTCGCGCTTATCACCGCATCATTAAAGTGGCGCGAACCATTGCTGATTTAGAAGGCGCACCTCAG
ATAACGCGTGCACACTTAGCCGAAGCACTCGGTTATCGGGCGATGGATCGCTTGCTCAAACAGTTAACTCTGCAAGCGGT
TTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

88.166

100

0.882
  comM Vibrio cholerae strain A1552

84.024

100

0.84
  comM Haemophilus influenzae Rd KW20

65.089

100

0.651
  comM Glaesserella parasuis strain SC1401

62.846

99.803

0.627
  comM Legionella pneumophila str. Paris

50.403

97.83

0.493
  comM Legionella pneumophila strain ERS1305867

50.403

97.83

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.432

Multiple sequence alignment