Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | VVCECT4999_RS11580 | Genome accession | NZ_CP014636 |
| Coordinates | 2327834..2328136 (-) | Length | 100 a.a. |
| NCBI ID | WP_011078144.1 | Uniprot ID | - |
| Organism | Vibrio vulnificus strain CECT 4999 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2322834..2333136
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VVCECT4999_RS11555 (VVCECT4999_10705) | - | 2323376..2324590 (+) | 1215 | WP_017420942.1 | pyridoxal phosphate-dependent aminotransferase | - |
| VVCECT4999_RS11560 (VVCECT4999_10710) | yfbR | 2324671..2325256 (+) | 586 | Protein_2038 | 5'-deoxynucleotidase | - |
| VVCECT4999_RS11565 (VVCECT4999_10715) | - | 2325262..2326593 (+) | 1332 | WP_039447863.1 | anti-phage deoxyguanosine triphosphatase | - |
| VVCECT4999_RS11570 (VVCECT4999_10720) | - | 2326615..2327223 (-) | 609 | WP_039447860.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| VVCECT4999_RS11575 (VVCECT4999_10725) | rrtA | 2327227..2327787 (+) | 561 | WP_277949674.1 | rhombosortase | - |
| VVCECT4999_RS11580 (VVCECT4999_10730) | comEA | 2327834..2328136 (-) | 303 | WP_011078144.1 | ComEA family DNA-binding protein | Machinery gene |
| VVCECT4999_RS11585 (VVCECT4999_10735) | ppiD | 2328269..2330128 (-) | 1860 | WP_039447855.1 | peptidylprolyl isomerase | - |
| VVCECT4999_RS11590 (VVCECT4999_10740) | - | 2330305..2330577 (-) | 273 | WP_013572181.1 | HU family DNA-binding protein | - |
| VVCECT4999_RS11595 (VVCECT4999_10745) | lon | 2330771..2333122 (-) | 2352 | WP_011078147.1 | endopeptidase La | - |
Sequence
Protein
Download Length: 100 a.a. Molecular weight: 10866.71 Da Isoelectric Point: 9.6573
>NTDB_id=172867 VVCECT4999_RS11580 WP_011078144.1 2327834..2328136(-) (comEA) [Vibrio vulnificus strain CECT 4999]
MKQVITLLAMLMAFSFPSVSFADSATKAADKYEGIEISVNINTATAEEIAMMLKGVGIKKAQQIVDFREANGPFKTVDEL
AQVKGIGKSTIEKNQSRIKL
MKQVITLLAMLMAFSFPSVSFADSATKAADKYEGIEISVNINTATAEEIAMMLKGVGIKKAQQIVDFREANGPFKTVDEL
AQVKGIGKSTIEKNQSRIKL
Nucleotide
Download Length: 303 bp
>NTDB_id=172867 VVCECT4999_RS11580 WP_011078144.1 2327834..2328136(-) (comEA) [Vibrio vulnificus strain CECT 4999]
ATGAAACAGGTAATTACCCTTTTAGCCATGCTAATGGCATTCTCTTTTCCTTCCGTTTCTTTTGCAGACTCTGCAACGAA
AGCGGCCGATAAATATGAAGGCATTGAGATTTCCGTCAACATCAACACGGCGACAGCAGAAGAAATTGCCATGATGTTAA
AAGGCGTTGGTATTAAAAAAGCTCAGCAAATTGTTGACTTTAGAGAAGCTAATGGACCGTTTAAAACGGTTGATGAGTTA
GCTCAAGTGAAAGGAATCGGTAAATCAACGATTGAGAAAAATCAGTCACGGATTAAGTTGTAA
ATGAAACAGGTAATTACCCTTTTAGCCATGCTAATGGCATTCTCTTTTCCTTCCGTTTCTTTTGCAGACTCTGCAACGAA
AGCGGCCGATAAATATGAAGGCATTGAGATTTCCGTCAACATCAACACGGCGACAGCAGAAGAAATTGCCATGATGTTAA
AAGGCGTTGGTATTAAAAAAGCTCAGCAAATTGTTGACTTTAGAGAAGCTAATGGACCGTTTAAAACGGTTGATGAGTTA
GCTCAAGTGAAAGGAATCGGTAAATCAACGATTGAGAAAAATCAGTCACGGATTAAGTTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
59 |
100 |
0.59 |
| comEA | Vibrio campbellii strain DS40M4 |
54 |
100 |
0.54 |
| comEA | Vibrio cholerae C6706 |
52.041 |
98 |
0.51 |
| comEA | Vibrio cholerae strain A1552 |
52.041 |
98 |
0.51 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
60 |
60 |
0.36 |