Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BMJ42_RS06865 Genome accession   NZ_CP018136
Coordinates   1234714..1235283 (-) Length   189 a.a.
NCBI ID   WP_073177105.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain SP49     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1229714..1240283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMJ42_RS12355 - 1230261..1230927 (-) 667 Protein_1276 winged helix-turn-helix domain-containing protein -
  BMJ42_RS06850 (BMJ42_01290) gdhA 1231267..1232613 (+) 1347 WP_000199575.1 NADP-specific glutamate dehydrogenase -
  BMJ42_RS06855 (BMJ42_01291) - 1232692..1233948 (-) 1257 WP_000436627.1 ISL3 family transposase -
  BMJ42_RS06860 (BMJ42_01292) - 1234531..1234701 (-) 171 WP_000711943.1 hypothetical protein -
  BMJ42_RS06865 (BMJ42_01293) comA 1234714..1235283 (-) 570 WP_073177105.1 ATP-binding cassette domain-containing protein Regulator
  BMJ42_RS12360 - 1235309..1235572 (-) 264 Protein_1281 transposase -
  BMJ42_RS12700 - 1235571..1235858 (+) 288 Protein_1282 transposase -
  BMJ42_RS06875 (BMJ42_01294) - 1236158..1236376 (-) 219 Protein_1283 hypothetical protein -
  BMJ42_RS06885 (BMJ42_01296) - 1236961..1238312 (+) 1352 WP_088804224.1 IS3-like element ISSpn4 family transposase -
  BMJ42_RS13745 - 1238412..1238810 (-) 399 Protein_1285 ATP-binding cassette domain-containing protein -
  BMJ42_RS06895 (BMJ42_01297) - 1238898..1239509 (-) 612 WP_000251931.1 V-type ATP synthase subunit D -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 21076.50 Da        Isoelectric Point: 8.4331

>NTDB_id=172795 BMJ42_RS06865 WP_073177105.1 1234714..1235283(-) (comA) [Streptococcus pneumoniae strain SP49]
MPSGLYKIDTGKVLFDGVNINQIDKKILSQNLGVVPQDSFLLNRSILDNITLKHEVTSQKIEEVCKAVQIYDEIMAMPMK
FNTIISEMGSNISGGQRQRIALARALINNPSIVILDEATSALDTINEERITKYIKSQGCTQIIVAHRLSTIKDADIIVVM
KGGKIVESGNHKYLMDLGGEYYSLYTKRK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=172795 BMJ42_RS06865 WP_073177105.1 1234714..1235283(-) (comA) [Streptococcus pneumoniae strain SP49]
ATACCATCAGGATTATATAAGATTGATACAGGAAAAGTTTTATTTGATGGTGTAAATATTAATCAAATAGATAAAAAAAT
ATTAAGTCAAAATTTAGGAGTAGTTCCACAGGATTCGTTTTTATTGAACAGAAGTATTCTTGATAACATAACTTTAAAGC
ACGAAGTTACTTCACAAAAGATAGAGGAAGTTTGTAAAGCAGTTCAAATCTATGATGAAATCATGGCTATGCCGATGAAA
TTTAATACTATCATCTCAGAGATGGGTTCAAATATTTCAGGTGGTCAAAGACAACGGATAGCACTGGCACGTGCATTAAT
AAATAATCCTAGTATTGTAATTTTAGATGAAGCAACTAGTGCTTTAGACACTATTAATGAGGAAAGAATAACAAAGTATA
TAAAAAGTCAGGGCTGTACTCAAATAATTGTAGCTCATAGATTGTCAACGATTAAGGATGCGGATATTATTGTTGTAATG
AAAGGTGGTAAGATTGTTGAGTCAGGAAATCATAAGTACTTAATGGATCTTGGTGGAGAGTACTACAGCTTATATACAAA
AAGGAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis NCTC 12261

42.473

98.413

0.418
  comA Streptococcus gordonii str. Challis substr. CH1

42.391

97.354

0.413
  comA Streptococcus mitis SK321

41.935

98.413

0.413
  comA/nlmT Streptococcus mutans UA159

41.848

97.354

0.407
  comA Streptococcus pneumoniae R6

41.398

98.413

0.407
  comA Streptococcus pneumoniae D39

41.398

98.413

0.407
  comA Streptococcus pneumoniae Rx1

41.398

98.413

0.407
  comA Streptococcus pneumoniae TIGR4

40.323

98.413

0.397