Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AYJ57_RS05780 Genome accession   NZ_CP014595
Coordinates   1186321..1187835 (+) Length   504 a.a.
NCBI ID   WP_066102468.1    Uniprot ID   A0A1B1PN17
Organism   Salipiger sp. CCB-MM3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1181321..1192835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYJ57_RS05760 (AYJ57_05765) dut 1182273..1182728 (-) 456 WP_066102459.1 dUTP diphosphatase -
  AYJ57_RS05765 (AYJ57_05770) coaBC 1182839..1184035 (-) 1197 WP_066106730.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  AYJ57_RS05770 (AYJ57_05775) - 1184146..1184994 (-) 849 WP_066102462.1 ChaN family lipoprotein -
  AYJ57_RS05775 (AYJ57_05780) - 1184991..1185872 (-) 882 WP_066102465.1 RNA polymerase factor sigma-32 -
  AYJ57_RS05780 (AYJ57_05785) comM 1186321..1187835 (+) 1515 WP_066102468.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AYJ57_RS05785 (AYJ57_05790) - 1187805..1188704 (-) 900 WP_066102471.1 alpha/beta hydrolase -
  AYJ57_RS05790 (AYJ57_05795) gshB 1188760..1189695 (-) 936 WP_066102474.1 glutathione synthase -
  AYJ57_RS26610 (AYJ57_05800) - 1189856..1190161 (-) 306 WP_335740011.1 YraN family protein -
  AYJ57_RS05800 (AYJ57_05805) rsmI 1190394..1191257 (-) 864 WP_066102477.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  AYJ57_RS05805 (AYJ57_05810) - 1191348..1192538 (+) 1191 WP_066102480.1 penicillin-binding protein activator -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 52811.70 Da        Isoelectric Point: 7.0633

>NTDB_id=172594 AYJ57_RS05780 WP_066102468.1 1186321..1187835(+) (comM) [Salipiger sp. CCB-MM3]
MAACAYTVAFDGVEARTVEVQCAVTPGVPGFAIVGLPDKAVSEARERIRAALQALAIALPSKRITVNLSPADLPKEGSHF
DLPIALGLLAALEVIPADELATAVALGELSLDGTLVAVPGALPAALTAAAEQRSLLCPAACGPEAAWVEACRVLAAASLS
EAIRHFTGAGPLEPARPGAAETAAPGPDLRDVSGQERAKRGLEIAAAGRHHLLFTGPPGTGKSMLARRLPGLMPPLSAAE
ALETAMIRSLAGELSEGRLSMVRPFQQPHHTASMAALTGGGRGARPGQISLAHNGVLFMDELPEFPRNVLDGLRQPLETG
EITVSRANAHVTYPCRFLLVAAANPCKCGHAGDPARACSRAPLCSEDYLGRISGPLMDRFDLRLEVPPVTIEEMALPPGG
EDSATIAARVTAARARQAARYAGHPRLRTNADVDGRLLDEIAAPDAEGRALLLRAAERFGLSMRGYHRVLRVSRTLADLE
GTEAIRRPHVAEALSYRLVSRSTP

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=172594 AYJ57_RS05780 WP_066102468.1 1186321..1187835(+) (comM) [Salipiger sp. CCB-MM3]
ATGGCGGCCTGCGCCTATACCGTCGCCTTCGACGGGGTCGAGGCGCGCACCGTCGAGGTTCAGTGCGCGGTAACCCCCGG
CGTGCCGGGGTTTGCCATCGTCGGCCTGCCGGATAAGGCCGTGTCCGAGGCGCGCGAGCGGATCCGCGCGGCGTTGCAGG
CGCTCGCCATCGCTCTGCCGTCCAAACGCATCACCGTGAACCTCTCACCTGCCGATCTGCCGAAAGAGGGCTCGCATTTC
GATCTGCCCATCGCGCTCGGCCTGCTGGCCGCGCTCGAGGTGATCCCCGCCGATGAGCTCGCCACCGCCGTTGCCCTCGG
CGAGCTCAGCCTCGATGGCACGCTGGTCGCCGTGCCGGGGGCGCTGCCCGCCGCCCTGACCGCCGCCGCAGAGCAACGCA
GCCTGCTCTGCCCGGCAGCCTGCGGCCCCGAGGCTGCCTGGGTCGAGGCCTGCCGCGTGCTCGCCGCCGCCAGCCTCTCG
GAAGCGATCCGCCATTTCACCGGCGCCGGACCGCTGGAGCCCGCACGCCCCGGCGCTGCCGAAACCGCTGCCCCCGGTCC
TGACCTGCGCGACGTCAGCGGGCAGGAGCGGGCCAAACGCGGGCTCGAGATCGCCGCCGCCGGGCGTCACCACCTGCTGT
TCACCGGCCCGCCCGGTACTGGTAAATCCATGCTGGCGCGGCGTCTGCCCGGCCTGATGCCGCCGCTCAGCGCCGCCGAG
GCGCTGGAGACCGCGATGATCCGCTCGCTGGCCGGGGAGCTTTCAGAGGGACGGCTCTCGATGGTGCGCCCGTTCCAGCA
GCCGCATCACACCGCCTCGATGGCGGCGCTCACCGGCGGCGGACGTGGCGCGCGCCCCGGGCAAATCAGCCTCGCCCACA
ATGGCGTGCTGTTCATGGACGAACTGCCGGAGTTCCCGCGCAACGTGCTCGACGGGCTGCGCCAGCCGCTCGAAACCGGC
GAGATCACCGTCTCGCGCGCCAATGCCCATGTCACCTACCCCTGCCGCTTTCTGCTCGTCGCCGCGGCCAACCCGTGCAA
ATGCGGCCACGCTGGCGATCCGGCCCGGGCCTGCTCACGCGCGCCGCTCTGCTCGGAGGACTATCTCGGACGCATCTCCG
GCCCGCTGATGGACCGCTTCGATCTGCGCCTCGAGGTGCCGCCGGTCACCATCGAAGAGATGGCCCTGCCGCCCGGCGGC
GAGGACAGCGCCACAATCGCCGCGCGTGTCACCGCCGCCCGCGCCCGTCAGGCCGCGCGCTATGCCGGGCACCCGAGGCT
GCGCACCAATGCGGATGTCGACGGACGGCTGCTCGACGAGATCGCCGCCCCCGACGCCGAGGGGCGCGCGCTGCTGTTGC
GGGCCGCAGAGCGTTTCGGCCTGTCGATGCGCGGCTATCACCGGGTGCTGCGGGTGTCCCGCACCCTCGCCGACCTCGAA
GGCACAGAGGCGATCCGCCGCCCGCATGTGGCCGAGGCGTTGAGCTACCGGCTGGTCTCGCGCAGCACGCCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-139)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B1PN17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

47.843

100

0.484
  comM Vibrio cholerae strain A1552

46.68

100

0.474
  comM Haemophilus influenzae Rd KW20

45.508

100

0.462
  comM Glaesserella parasuis strain SC1401

45.365

100

0.456
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.725

100

0.442
  comM Legionella pneumophila str. Paris

40.408

97.222

0.393
  comM Legionella pneumophila strain ERS1305867

40.408

97.222

0.393

Multiple sequence alignment